Rename columns in tax_table

Rename columns (taxonomic ranks) in tax_table using tidyselect semantics.

Usage

rename_taxa_pq(physeq, ...)

Arguments

physeq

(phyloseq, required) A phyloseq object.

...

Name-value pairs where the name is the new name and the value is the old name. Use new_name = old_name syntax.

Value

A phyloseq object with renamed tax_table columns.

Author

Adrien Taudière

Examples

library(MiscMetabar)
# Rename a single rank
rename_taxa_pq(data_fungi, tax_kingdom = Kingdom)
#> Error in dplyr::rename(tax_df, ...): Can't rename columns that don't exist.
#> ✖ Column `Kingdom` doesn't exist.

# Rename multiple ranks
rename_taxa_pq(data_fungi, tax_kingdom = Kingdom, tax_phylum = Phylum)
#> Error in dplyr::rename(tax_df, ...): Can't rename columns that don't exist.
#> ✖ Column `Kingdom` doesn't exist.