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Changelog

Source: NEWS.md

bootpq 0.0.0.9000

  • Initial development version of the package, providing bootstrapping by rarefaction permutations for ‘phyloseq’ objects.
  • Add a “Get started with bootpq” vignette and a pkgdown website skeleton.
  • adonis_rarperm_pq() computes PERMANOVA (via MiscMetabar::adonis_pq()) across many rarefaction permutations and summarizes the results as mean and quantiles, migrated from ‘MiscMetabar’.
  • hill_test_rarperm_pq() tests the effect of a factor on Hill numbers across many rarefaction permutations using ggstatsplot::ggbetweenstats(), migrated from ‘MiscMetabar’.
  • var_par_rarperm_pq() partitions the variation of a ‘phyloseq’ object across many rarefaction permutations, averaging adjusted R squared and reporting quantiles, migrated from ‘MiscMetabar’.