Diversity indices per sample, optionally grouped by a modality

Computes alpha-diversity indices (via divent::ent_shannon(), divent::ent_simpson() or vegan::diversity() for other indices) and/or Hill numbers (via MiscMetabar::divent_hill_matrix_pq()) for each sample in a phyloseq object. When modality is supplied the computation is done separately for each level of that grouping variable and the level label is appended as an extra column. NA values in the modality column are kept as a distinct group so that samples with missing metadata are never silently dropped. When modality = NULL all samples are analysed together and no grouping column is added to the result.

Usage

div_pq(
  physeq,
  modality = NULL,
  indices = "shannon",
  q = NULL,
  scales = lifecycle::deprecated(),
  aggregate = FALSE,
  funs = list(mean = mean, sd = sd),
  significance = FALSE,
  test = c("kruskal", "wilcox"),
  p_alpha = 0.05
)

Arguments

physeq

(phyloseq, required) A phyloseq object.

modality

(character or NULL, default NULL) Name of a column in sample_data(physeq) used to split samples into groups. NA values are treated as a separate group. When NULL, indices are computed for the whole dataset without grouping.

indices

(character, default "shannon") One or more index names. "shannon" and "simpson" are computed via divent; other names are forwarded to vegan::diversity(). Set to NULL to skip.

q

(numeric or NULL, default NULL) Hill diversity orders passed to MiscMetabar::divent_hill_matrix_pq(). When NULL, Hill computation is skipped. Formerly scales.

scales

Use q instead.

aggregate

(logical, default FALSE) If TRUE and modality is not NULL, summarise per-group results using funs.

funs

(named list, default list(mean = mean, sd = sd)) Summary functions applied when aggregate = TRUE. Passed to dplyr::across().

significance

(logical, default FALSE) If TRUE, aggregate is TRUE, and modality has at least 2 levels, run a significance test for each index. P-values are appended as extra columns named {index}_(kruskal.p) (or {index}_(wilcox.p) when test = "wilcox"). When modality has more than 2 levels, Tukey HSD pairwise comparisons are also run (via stats::TukeyHSD() on stats::aov()) and compact letter display columns {index}_(tukey.letters) are appended using the multcompView package (must be installed).

test

(character, default "kruskal") Overall test used when significance = TRUE. One of:

• "kruskal": stats::kruskal.test() (works for 2 or more groups).

• "wilcox": stats::wilcox.test() (requires exactly 2 levels).

p_alpha

(numeric, default 0.05) Significance threshold used for the compact letter display when significance = TRUE and modality has more than 2 levels.

Value

A data frame with one row per sample. Columns correspond to the requested indices and/or Hill / Rényi scales. When modality is supplied, an additional column named after modality identifies the group (possibly NA). When aggregate = TRUE rows are collapsed to one per group with summary statistics. When significance = TRUE, additional columns {index}_(test.p) contain the overall p-value and, for more than 2 groups, {index}_(tukey.letters) contains the compact letter display from Tukey HSD pairwise comparisons.

Details

See also

MiscMetabar::divent_hill_matrix_pq(), divent::div_hill()

Author

Adrien Taudière

Examples

div_pq(data_fungi_mini, indices = c("shannon", "simpson"))
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Sample coverage is 0, most estimators will return `NaN`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Sample coverage is 0, most estimators will return `NaN`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#>          shannon      simpson
#> 1   1.3293751331 0.6992588713
#> 2   0.0122556717 0.0027423301
#> 3   1.4235388425 0.7277879737
#> 4   0.5056841131 0.1846622682
#> 5   0.6867609795 0.4938916596
#> 6   0.8037421073 0.4852941176
#> 7   0.8995904369 0.4830420404
#> 8   0.7786349334 0.4589325210
#> 9   0.0474342125 0.0144621343
#> 10  0.1901411023 0.0733752621
#> 11  0.4805788009 0.2156862745
#> 12  0.0587202018 0.0209708464
#> 13  1.0384951708 0.6277344674
#> 14  0.0372539285 0.0101122696
#> 15  0.6474978705 0.3759909262
#> 16  0.7095799378 0.4595731662
#> 17  0.9061559553 0.4636163625
#> 18  0.6625917916 0.4501354056
#> 19  0.8358825741 0.4299418785
#> 20  0.2340816385 0.0861469551
#> 21  0.4968117772 0.3182625425
#> 22  1.3737337255 0.7424037033
#> 23  0.9387392268 0.5595548701
#> 24  0.7255636051 0.5019617668
#> 25  0.8075164154 0.4684352893
#> 26  1.0451520037 0.5270841817
#> 27  0.0000000000 0.0000000000
#> 28  0.0000000000 0.0000000000
#> 29  0.8887585595 0.5525267753
#> 30  0.7373407049 0.4472958057
#> 31  0.0000000000 0.0000000000
#> 32  0.7952515313 0.5235712365
#> 33  0.3475049005 0.1344639562
#> 34  0.0000000000 0.0000000000
#> 35  0.1385857217 0.0585482518
#> 36  1.3439085459 0.7018094255
#> 37  0.3184468659 0.1713705519
#> 38  0.0000000000 0.0000000000
#> 39  1.8845226070 0.8381487315
#> 40  0.0000000000 0.0000000000
#> 41  0.0030722055 0.0006061218
#> 42  0.0022327924 0.0004479534
#> 43  0.4994335645 0.2909712156
#> 44  0.1228294281 0.0511115913
#> 45  0.0000000000 0.0000000000
#> 46  0.8429417591 0.5282633661
#> 47  0.1260232873 0.0540265036
#> 48  0.0000000000 0.0000000000
#> 49  0.9042114434 0.5493849941
#> 50  1.1008332370 0.6095326248
#> 51  0.5825842452 0.3162055336
#> 52  0.9288940175 0.4650375326
#> 53  1.0490396848 0.5870487761
#> 54  0.2601558945 0.1171333936
#> 55  0.8338038603 0.3933651124
#> 56  0.2612258902 0.1130711665
#> 57  0.0000000000 0.0000000000
#> 58  0.0000000000 0.0000000000
#> 59  0.0000000000 0.0000000000
#> 60  1.3176419921 0.6197607690
#> 61  1.3685087417 0.7097968155
#> 62  0.4153797972 0.1759885907
#> 63  0.3523451816 0.1374713882
#> 64  0.9069561583 0.4780509219
#> 65  0.3861256278 0.1999755320
#> 66  0.0050221739 0.0010584193
#> 67  0.0000000000 0.0000000000
#> 68  0.0000000000 0.0000000000
#> 69  1.0413632022 0.5839801091
#> 70  0.3867347412 0.1850980392
#> 71  0.0057975973 0.0014027207
#> 72  0.0000000000 0.0000000000
#> 73  0.6344664416 0.4258232378
#> 74  1.2763084743 0.6621951220
#> 75  0.4880695250 0.2608123105
#> 76  0.0049895382 0.0010826903
#> 77  0.6829081047 0.5714285714
#> 78  0.0000000000 0.0000000000
#> 79  0.0112903176 0.0025996524
#> 80  0.0177993412 0.0048970823
#> 81  0.0738682187 0.0257955353
#> 82  0.1217970507 0.0413494331
#> 83  0.0000000000 0.0000000000
#> 84  0.2033228917 0.0933502013
#> 85  0.0055889146 0.0012499510
#> 86  0.0000000000 0.0000000000
#> 87  0.3607758756 0.1772692601
#> 88  0.0000000000 0.0000000000
#> 89  0.0000000000 0.0000000000
#> 90  1.2280735036 0.6643717728
#> 91  0.7887029186 0.5043812046
#> 92  0.0000000000 0.0000000000
#> 93  1.1113437660 0.5788589318
#> 94  1.0779007904 0.5989942801
#> 95  0.6844825518 0.3173259783
#> 96  1.1205052176 0.6259507424
#> 97  0.5263331625 0.3250591017
#> 98  1.0974779792 0.6169497945
#> 99  1.0742286090 0.6116730668
#> 100 0.9809879853 0.6666666667
#> 101 0.0787284992 0.0225417440
#> 102 0.0049292549 0.0010261724
#> 103 0.0333397680 0.0097604153
#> 104 0.0348775115 0.0112994350
#> 105 0.4049634851 0.2457142857
#> 106 0.8662483544 0.5058823529
#> 107 0.0000000000 0.0000000000
#> 108 1.0339385145 0.5835940718
#> 109 1.0040588062 0.5624615672
#> 110 0.0000000000 0.0000000000
#> 111 0.3144922013 0.1809523810
#> 112 0.0000000000 0.0000000000
#> 113 0.7751338005 0.4398170646
#> 114 0.7667980847 0.5238095238
#> 115 0.7437545484 0.4998267821
#> 116 0.6931471806 1.0000000000
#> 117 0.0000000000 0.0000000000
#> 118 1.2848846975 0.6190410575
#> 119 0.3561170324 0.2007087804
#> 120 0.6057974994 0.4411764706
#> 121 1.1022297190 0.6008116666
#> 122 0.3953244118 0.1828512901
#> 123 0.0000000000 0.0000000000
#> 124 1.2766179966 0.6688547658
#> 125 0.6931471806 1.0000000000
#> 126 1.3837460904 0.7512740689
#> 127 1.5060059771 0.7644525886
#> 128 1.3363281925 0.7193055410
#> 129 0.0009560406 0.0001859427
#> 130 0.0000000000 0.0000000000
#> 131 1.5647993844 0.7741398446
#> 132 0.7119604425 0.4902390456
#> 133 0.9331492458 0.5311792267
#> 134 0.3488320958 0.2222222222
#> 135 0.7647602691 0.3620123081
#> 136 0.9809879853 0.6666666667
#> 137 0.2925991562 0.1162738472

div_pq(
  data_fungi_mini,
  modality = "Height",
  indices = c("shannon", "simpson"),
  q = c(0, 1, 2)
)
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Sample coverage is 0, most estimators will return `NaN`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Sample coverage is 0, most estimators will return `NaN`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Sample coverage is 0, most estimators will return `NaN`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Sample coverage is 0, most estimators will return `NaN`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Sample coverage is 0, most estimators will return `NaN`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Sample coverage is 0, most estimators will return `NaN`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Sample coverage is 0, most estimators will return `NaN`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Sample coverage is 0, most estimators will return `NaN`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#>          shannon      simpson hill_0   hill_1   hill_2 Height
#> 1   1.3293751331 0.6992588713      6 3.778681 3.321022    Low
#> 2   0.6867609795 0.4938916596      2 1.987268 1.974830    Low
#> 3   0.4805788009 0.2156862745      5 1.617010 1.272737    Low
#> 4   0.7095799378 0.4595731662      8 2.033137 1.850398    Low
#> 5   0.4968117772 0.3182625425      2 1.643473 1.463907    Low
#> 6   0.9387392268 0.5595548701      7 2.556756 2.269958    Low
#> 7   0.1385857217 0.0585482518      6 1.148648 1.062169    Low
#> 8   0.0000000000 0.0000000000      1 1.000000 1.000000    Low
#> 9   0.0030722055 0.0006061218      7 1.003077 1.000606    Low
#> 10  0.9042114434 0.5493849941      7 2.469983 2.219008    Low
#> 11  0.2601558945 0.1171333936      3 1.297132 1.130844    Low
#> 12  0.0000000000 0.0000000000      1 1.000000 1.000000    Low
#> 13  0.3523451816 0.1374713882      6 1.422399 1.159295    Low
#> 14  0.0050221739 0.0010584193      4 1.005035 1.001059    Low
#> 15  0.0000000000 0.0000000000      1 1.000000 1.000000    Low
#> 16  0.4880695250 0.2608123105      7 1.629168 1.352777    Low
#> 17  0.6829081047 0.5714285714      2 1.979626 1.960000    Low
#> 18  0.0738682187 0.0257955353      6 1.076665 1.026479    Low
#> 19  0.0000000000 0.0000000000      1 1.000000 1.000000    Low
#> 20  0.0000000000 0.0000000000      1 1.000000 1.000000    Low
#> 21  0.6844825518 0.3173259783      6 1.982746 1.463123    Low
#> 22  0.9809879853 0.6666666667      3 2.667090 2.417902    Low
#> 23  0.0000000000 0.0000000000      1 1.000000 1.000000    Low
#> 24  0.3144922013 0.1809523810      2 1.369564 1.208219    Low
#> 25  0.7751338005 0.4398170646      8 2.170883 1.785130    Low
#> 26  0.0000000000 0.0000000000      1 1.000000 1.000000    Low
#> 27  0.6057974994 0.4411764706      2 1.832713 1.710059    Low
#> 28  0.0000000000 0.0000000000      1 1.000000 1.000000    Low
#> 29  1.3837460904 0.7512740689      4 3.989820 3.979741    Low
#> 30  0.0000000000 0.0000000000      1 1.000000 1.000000    Low
#> 31  0.3488320958 0.2222222222      2 1.417411 1.246154    Low
#> 32  0.7647602691 0.3620123081      7 2.148479 1.566315    Low
#> 33  0.0122556717 0.0027423301      7 1.012331 1.002750   High
#> 34  0.7786349334 0.4589325210      8 2.178496 1.848196   High
#> 35  0.0587202018 0.0209708464      2 1.060478 1.021415   High
#> 36  0.9061559553 0.4636163625     10 2.474791 1.864346   High
#> 37  0.7255636051 0.5019617668      3 2.065895 2.007785   High
#> 38  0.0000000000 0.0000000000      1 1.000000 1.000000   High
#> 39  0.0000000000 0.0000000000      1 1.000000 1.000000   High
#> 40  1.3439085459 0.7018094255      7 3.834000 3.351706   High
#> 41  0.0022327924 0.0004479534      5 1.002235 1.000448   High
#> 42  1.1008332370 0.6095326248      6 3.006670 2.554421   High
#> 43  0.0000000000 0.0000000000      1 1.000000 1.000000   High
#> 44  0.0000000000 0.0000000000      1 1.000000 1.000000   High
#> 45  0.3867347412 0.1850980392      3 1.472166 1.221700   High
#> 46  0.6344664416 0.4258232378      6 1.886016 1.741623   High
#> 47  0.0000000000 0.0000000000      1 1.000000 1.000000   High
#> 48  0.2033228917 0.0933502013      4 1.225468 1.102917   High
#> 49  0.3607758756 0.1772692601      3 1.434442 1.213191   High
#> 50  1.2280735036 0.6643717728      5 3.414645 2.910891   High
#> 51  1.1113437660 0.5788589318      5 3.038439 2.368687   High
#> 52  1.1205052176 0.6259507424      7 3.066403 2.672528   High
#> 53  1.0974779792 0.6169497945      5 2.996599 2.609700   High
#> 54  0.0787284992 0.0225417440      6 1.081911 1.023059   High
#> 55  0.0348775115 0.0112994350      2 1.035493 1.011363   High
#> 56  1.0339385145 0.5835940718      7 2.812120 2.400615   High
#> 57  1.5060059771 0.7644525886      8 4.508687 4.245029   High
#> 58  1.5647993844 0.7741398446      9 4.781716 4.427453   High
#> 59  0.9331492458 0.5311792267      5 2.542504 2.130989   High
#> 60  0.9809879853 0.6666666667      3 2.667090 2.417902   High
#> 61  1.4235388425 0.7277879737      7 4.151787 3.664966 Middle
#> 62  1.0384951708 0.6277344674      7 2.824963 2.685002 Middle
#> 63  0.0372539285 0.0101122696      4 1.037957 1.010218 Middle
#> 64  0.6474978705 0.3759909262      5 1.910754 1.602471 Middle
#> 65  0.6625917916 0.4501354056      3 1.939813 1.816966 Middle
#> 66  0.8075164154 0.4684352893      5 2.242332 1.879950 Middle
#> 67  0.8887585595 0.5525267753     24 2.432108 2.234763 Middle
#> 68  0.3184468659 0.1713705519      5 1.374991 1.206796 Middle
#> 69  0.4994335645 0.2909712156      6 1.647788 1.410376 Middle
#> 70  0.1260232873 0.0540265036      2 1.134309 1.056558 Middle
#> 71  0.5825842452 0.3162055336      3 1.790660 1.433604 Middle
#> 72  0.0000000000 0.0000000000      1 1.000000 1.000000 Middle
#> 73  0.9069561583 0.4780509219      7 2.476772 1.915471 Middle
#> 74  0.0000000000 0.0000000000      1 1.000000 1.000000 Middle
#> 75  1.2763084743 0.6621951220      5 3.583387 2.825210 Middle
#> 76  0.0000000000 0.0000000000      1 1.000000 1.000000 Middle
#> 77  0.0055889146 0.0012499510      3 1.005605 1.001251 Middle
#> 78  0.0000000000 0.0000000000      1 1.000000 1.000000 Middle
#> 79  0.0000000000 0.0000000000      1 1.000000 1.000000 Middle
#> 80  1.0779007904 0.5989942801      6 2.938505 2.493204 Middle
#> 81  0.5263331625 0.3250591017      3 1.692714 1.477845 Middle
#> 82  1.0742286090 0.6116730668      5 2.927734 2.567688 Middle
#> 83  0.0000000000 0.0000000000      1 1.000000 1.000000 Middle
#> 84  1.0040588062 0.5624615672      5 2.729337 2.284681 Middle
#> 85  0.7667980847 0.5238095238      3 2.152862 2.060241 Middle
#> 86  0.7437545484 0.4998267821      3 2.103820 1.995110 Middle
#> 87  0.6931471806 1.0000000000      2 2.000000 2.000000 Middle
#> 88  1.3363281925 0.7193055410      6 3.805046 3.561964 Middle
#> 89  0.7119604425 0.4902390456      5 2.037983 1.961554 Middle
#> 90  0.2925991562 0.1162738472      4 1.339906 1.131557 Middle
#> 91  0.5056841131 0.1846622682     10 1.658119 1.226407   <NA>
#> 92  0.8037421073 0.4852941176      3 2.233885 1.840764   <NA>
#> 93  0.8995904369 0.4830420404      6 2.458596 1.934101   <NA>
#> 94  0.0474342125 0.0144621343      5 1.048577 1.014673   <NA>
#> 95  0.1901411023 0.0733752621      5 1.209420 1.078992   <NA>
#> 96  0.8358825741 0.4299418785      5 2.306849 1.753408   <NA>
#> 97  0.2340816385 0.0861469551      7 1.263748 1.094259   <NA>
#> 98  1.3737337255 0.7424037033      7 3.950072 3.881949   <NA>
#> 99  1.0451520037 0.5270841817      9 2.843831 2.114546   <NA>
#> 100 0.0000000000 0.0000000000      1 1.000000 1.000000   <NA>
#> 101 0.7373407049 0.4472958057      4 2.090369 1.808210   <NA>
#> 102 0.7952515313 0.5235712365      7 2.214998 2.098953   <NA>
#> 103 0.3475049005 0.1344639562      8 1.415531 1.155352   <NA>
#> 104 0.0000000000 0.0000000000      1 1.000000 1.000000   <NA>
#> 105 1.8845226070 0.8381487315      8 6.583211 6.173399   <NA>
#> 106 0.0000000000 0.0000000000      1 1.000000 1.000000   <NA>
#> 107 0.1228294281 0.0511115913      3 1.130692 1.053861   <NA>
#> 108 0.0000000000 0.0000000000      1 1.000000 1.000000   <NA>
#> 109 0.8429417591 0.5282633661      7 2.323191 2.119591   <NA>
#> 110 0.0000000000 0.0000000000      1 1.000000 1.000000   <NA>
#> 111 0.9288940175 0.4650375326      7 2.531708 1.865068   <NA>
#> 112 1.0490396848 0.5870487761      7 2.854908 2.421389   <NA>
#> 113 0.8338038603 0.3933651124      7 2.302059 1.647721   <NA>
#> 114 0.2612258902 0.1130711665      4 1.298521 1.127462   <NA>
#> 115 1.3176419921 0.6197607690     10 3.734605 2.628309   <NA>
#> 116 1.3685087417 0.7097968155      6 3.929486 3.445494   <NA>
#> 117 0.4153797972 0.1759885907      7 1.514946 1.213532   <NA>
#> 118 0.3861256278 0.1999755320      5 1.471269 1.249903   <NA>
#> 119 1.0413632022 0.5839801091      7 2.833076 2.403005   <NA>
#> 120 0.0057975973 0.0014027207      2 1.005814 1.001404   <NA>
#> 121 0.0049895382 0.0010826903      3 1.005002 1.001084   <NA>
#> 122 0.0112903176 0.0025996524      7 1.011354 1.002605   <NA>
#> 123 0.0177993412 0.0048970823      3 1.017959 1.004920   <NA>
#> 124 0.1217970507 0.0413494331      6 1.129525 1.043131   <NA>
#> 125 0.7887029186 0.5043812046      9 2.200540 2.017670   <NA>
#> 126 0.0049292549 0.0010261724      4 1.004941 1.001027   <NA>
#> 127 0.0333397680 0.0097604153      4 1.033902 1.009856   <NA>
#> 128 0.4049634851 0.2457142857      2 1.499248 1.317176   <NA>
#> 129 0.8662483544 0.5058823529      3 2.377973 2.008688   <NA>
#> 130 0.0000000000 0.0000000000      1 1.000000 1.000000   <NA>
#> 131 0.6931471806 1.0000000000      2 2.000000 2.000000   <NA>
#> 132 1.2848846975 0.6190410575      7 3.614251 2.618286   <NA>
#> 133 0.3561170324 0.2007087804      5 1.427775 1.251109   <NA>
#> 134 1.1022297190 0.6008116666      7 3.010872 2.503639   <NA>
#> 135 0.3953244118 0.1828512901      4 1.484866 1.222420   <NA>
#> 136 1.2766179966 0.6688547658     10 3.584496 3.019785   <NA>
#> 137 0.0009560406 0.0001859427      2 1.000956 1.000186   <NA>

div_pq(
  data_fungi_mini,
  modality = "Height",
  indices = "shannon",
  aggregate = TRUE
)
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Sample coverage is 0, most estimators will return `NaN`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Sample coverage is 0, most estimators will return `NaN`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> ! Function arguments cannot be checked because the package divent is not attached.
#> → Add `CheckArguments=FALSE` to suppress this warning or run `library('divent')`.
#> # A tibble: 4 × 4
#>   Height n_samples `shannon_(mean)` `shannon_(sd)`
#>   <chr>      <int>            <dbl>          <dbl>
#> 1 High          28            0.614          0.543
#> 2 Low           32            0.419          0.415
#> 3 Middle        30            0.582          0.456
#> 4 NA            47            0.545          0.503