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Circle of correspondence between two taxonomic levels

Source: R/compare_taxo_plot.R
tc_circle.Rd

lifecycle-experimental

Useful to compare taxonomy from two different source/db/algo side-by-side

Usage

tc_circle(
  physeq,
  rank_1 = NULL,
  rank_2 = NULL,
  suffix_1 = "_1",
  suffix_2 = "_2"
)

Arguments

physeq

(required) A phyloseq-class object obtained using the phyloseq package.

rank_1

(character or integer) Define the first taxonomic rank as the number or the name of the column in tax_table slot.

rank_2

(character or integer) Define the second taxonomic rank as the number or the name of the column in tax_table slot.

suffix_1

(character, default "_1") A suffix to add to rank_1 values.

suffix_2

(character, default "_2") A suffix to add to rank_2 values.

Value

A ggplot2 object

Author

Adrien Taudière

Examples

tc_circle(
  Glom_otu,
  "Genus__eukaryome_Glomero",
  "Genus",
  suffix_1 = "_Euk",
  suffix_2 = "_Marjaam"
)


tc_circle(
  Glom_otu,
  "Family__eukaryome_Glomero",
  "Family",
  suffix_1 = "_Euk",
  suffix_2 = "_Marjaam"
)