Package index

Data Import

Functions to import MiteMap data from various sources

import_mitemap()

Import MiteMapTools data

import_mitemap_from_multiple_folder()

Import mitemap from multiple folders

Data Processing

Functions to filter and clean tracking data

filter_mitemap()

Filter (clean) MiteMap result

summarize_mitemap()

Summarize MiteMap data at the individual (File) level

Visualization

Functions to create plots and visualizations

plot_ind_mitemap()

Plot individual map

vioplot_mitemap()

Make violin plot of MiteMap data

extract_heatmap()

Create folder(s) with heatmaps extracted from zip files optionally organized by a factor

Statistical Analysis

Functions for behavioral analysis and statistics

binom_test_mitemap()

Test binomial on MiteMap for presence in the half part of the odor

convex_hull_mitemap()

Map convex hull on MiteMap

Example Data

Sample datasets included with the package

MM_data

example dataset from MiteMapTools

Utilities

Helper functions and utilities

get_file_extension()

Get the extension of a file

MiteMapTools-package MiteMapTools

MiteMapTools: A toolkit for analyzing arthropod movement data

rename_files_with_number()

Rename files with number inside a folder

compute_crossings()

Compute Crossings Between Path Segments