Checking Taxa Presence in Samples
Source:vignettes/checking-taxa-presence.Rmd
checking-taxa-presence.RmdOverview
One of the key challenges in environmental sequencing studies is
determining whether detected taxa are likely to be actually present at
your sampling sites. This vignette demonstrates how to use
taxinfo’s occurrence checking functions to validate the
likelihood of taxa presence based on known geographic distributions.
As most of taxinfo’s utilities, these functions can
accept either a phyloseq object with cleaned taxonomic names or a vector
of taxonomic names (taxnames parameter). The algorithm used
to assign the taxonomic names must be stringent enough to avoid false
positives. Moreover, we recommend using gna_verifier_pq()
to clean taxonomic names by disambiguating synonyms and correcting
misspellings.
Core Functions
The main functions for checking taxa presence are:
-
tax_occur_check(): Core occurrence checking function for individual taxa -
tax_occur_check_pq(): Check occurrence likelihood within a radius around samples -
tax_occur_multi_check_pq(): Check multiple locations simultaneously
Basic Occurrence Checking for individual taxa
How many Quercus robur occurrences have been reported within 100km of Paris, France?
Q_rob_in_Paris <- tax_occur_check("Quercus robur", 2.3522, 48.8566, 100)
Q_rob_in_Paris$count_in_radius#> [1] 755
# Visualize occurrences around Paris for Fagus sylvatica
res_occ <- tax_occur_check("Fagus sylvatica", 2.3522, 48.8566, 200,
return_all_occ = TRUE
)
occ_data_sf <- sf::st_as_sf(res_occ$occ_data,
coords = c("decimalLongitude", "decimalLatitude"),
crs = 4326
)
if (requireNamespace("leaflet")) {
library(leaflet)
}
if (requireNamespace("leafpop")) {
library(leafpop)
}
leaflet() |>
addTiles() |>
setView(2.3522, 48.8566, zoom = 12) |>
fitBounds(
lat1 = as.vector(sf::st_bbox(occ_data_sf))[2],
lng1 = as.vector(sf::st_bbox(occ_data_sf))[1],
lat2 = as.vector(sf::st_bbox(occ_data_sf))[4],
lng2 = as.vector(sf::st_bbox(occ_data_sf))[3]
) |>
leaflet::addCircles(data = occ_data_sf, color = "blue", stroke = 1, opacity = 0.8) |>
leaflet::addCircleMarkers(2.3522, 48.8566, color = "orange", radius = 2, opacity = 1)Basic Occurrence Checking fo phyloseq object
Setting Up the Data
# Load example data
data("data_fungi_mini", package = "MiscMetabar")
# Keep only first 20 taxa for speed
data_clean <- prune_taxa(taxa = taxa_names(data_fungi_mini)[1:20], data_fungi_mini) |>
gna_verifier_pq(data_sources = 210)
summary_plot_pq(data_clean)
#> Taxonomy Table: [6 taxa by 3 taxonomic ranks]:
#> Genus Species currentCanonicalSimple
#> ASV7 NA NA NA
#> ASV8 "Stereum" "ostrea" "Stereum ostrea"
#> ASV12 "Xylodon" "raduloides" "Xylodon"
#> ASV18 "Stereum" "ostrea" "Stereum ostrea"
#> ASV25 "Ossicaulis" "lachnopus" "Ossicaulis lachnopus"
#> ASV26 "Stereum" "hirsutum" "Stereum hirsutum"Single Location Occurrence Check
Check if taxa in your phyloseq object have been reported within a specific radius of your sampling location:
# Define sampling coordinates (example: Paris, France)
longitude <- 2.3488
latitude <- 48.8534
# Check occurrence within 100km radius
occurrence_check <- tax_occur_check_pq(
data_clean,
longitude = longitude,
latitude = latitude,
radius_km = 100,
n_occur = 1000,
add_to_phyloseq = FALSE
)
# View results
head(occurrence_check)#> # A tibble: 6 × 10
#> taxa_name count_in_radius closest_distance_km mean_distance_km
#> <chr> <dbl> <dbl> <dbl>
#> 1 Stereum ostrea 1 47.1 47.1
#> 2 Ossicaulis lachnopus 0 NA NA
#> 3 Stereum hirsutum 438 8.3 57.3
#> 4 Basidiodendron eyrei 3 55.4 58.9
#> 5 Sistotrema oblongisporum 1 53 53
#> 6 Fomes fomentarius 599 8.17 54.2
#> # ℹ 6 more variables: total_count_in_world <dbl>, search_radius <dbl>,
#> # closest_point_lat <dbl>, closest_point_lon <dbl>, sample_point_lat <dbl>,
#> # sample_point_lon <dbl>Example Visualization
Here’s what occurrence checking results might look like:
We can also explore the minimum and mean distance to sampling location.
occurrence_check |>
mutate(Genus = stringr::word(taxa_name, 1)) |>
filter(!is.na(mean_distance_km)) |>
mutate(taxa_name = forcats::fct_reorder(taxa_name, mean_distance_km)) |>
ggplot(aes(x = mean_distance_km, y = taxa_name)) +
geom_col(aes(fill = Genus)) +
scale_fill_idest_d(name = "Genus") +
geom_text(aes(label = paste0("Closest: ", closest_distance_km, " km"), x = 10), size = 3) +
geom_text(aes(label = paste0("n=", count_in_radius)), nudge_x = -2, size = 3)
The results include:
-
taxa_name: Taxonomic name checked -
count_in_radius: Number of occurrences within the specified radius -
total_count_in_world: Total global occurrences for this taxon -
radius_km: Search radius used -
longitude/latitude: Center coordinates -
closest_distance_km: The distance to the closest occurrence point -
closest_distance_km: The mean distance to occurrence point
Advanced Occurrence Checking
Multiple Radius Analysis
Compare occurrence patterns at different spatial scales:
# Check multiple radii
radii <- c(50, 100, 200, 500)
occurrence_multi_radius <- map_dfr(radii, function(r) {
tax_occur_check_pq(data_clean,
longitude = longitude,
latitude = latitude,
radius_km = r,
n_occur = 1000,
add_to_phyloseq = FALSE
) |>
mutate(radius_category = paste(r, "km"))
})
# Visualize scaling patterns
occurrence_multi_radius |>
ggplot(aes(x = radius_category, y = count_in_radius, group = taxa_name)) +
geom_line(alpha = 0.6) +
geom_point(alpha = 0.8) +
facet_wrap(~taxa_name, scales = "free_y") +
labs(
title = "Occurrence Scaling by Radius",
x = "Search Radius",
y = "Count in Radius"
) +
theme_idest(base_size = 8, strip_text_size = 7, strip_text_face = "italic")
Filtering Unlikely Taxa
Use occurrence data to filter taxa that are unlikely to be present:
# Set threshold for likely presence (e.g., at least 5 occurrences within 100km)
min_occurrences <- 5
likely_present <- occurrence_check |>
filter(count_in_radius >= min_occurrences) |>
pull(taxa_name)
# Filter phyloseq object to keep only likely present taxa
# Note that all samples are kept, use clean_pq if you want to remove empty samples
data_filtered <- select_taxa_pq(data_clean, taxnames = likely_present)
compar <- MiscMetabar::track_wkflow(
list(
"initial" = data_clean,
"filtered" = clean_pq(data_filtered)
),
verbose = FALSE
)
knitr::kable(compar)<!-- KNITR_ASIS_OUTPUT_TOKEN -->
| | nb_sequences| nb_clusters| nb_samples|
|:--------|------------:|-----------:|----------:|
|initial | 388567| 20| 137|
|filtered | 77836| 6| 27|
<!-- KNITR_ASIS_OUTPUT_TOKEN -->```
</div>
## Multi-Location Checking
For studies with multiple sampling sites:
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#>
[32m■■■
[39m 8% | ETA: 6m
#>
[36m•
[39m Closest occurrence:
[34m17.91
[39m km
#>
#>
[32m■■■
[39m 8% | ETA: 6m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m3
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m3
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■
[39m 8% | ETA: 6m
#>
[32m✔
[39m Found
[34m3
[39m occurrences for species
[3mBasidiodendron eyrei
[23m:
#>
#>
[32m■■■
[39m 8% | ETA: 6m
#>
[36m•
[39m Closest occurrence:
[34m85.74
[39m km
#>
#>
[32m■■■
[39m 8% | ETA: 6m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■
[39m 8% | ETA: 6m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mSistotrema oblongisporum
[23m:
#>
#>
[32m■■■
[39m 8% | ETA: 6m
#>
[36m•
[39m Closest occurrence:
[34m90.01
[39m km
#>
#>
[32m■■■
[39m 8% | ETA: 6m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m488
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m488
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■
[39m 8% | ETA: 6m
#>
[32m✔
[39m Found
[34m454
[39m occurrences for species
[3mFomes fomentarius
[23m:
#>
#>
[32m■■■
[39m 8% | ETA: 6m
#>
[36m•
[39m Closest occurrence:
[34m8.4
[39m km
#>
#>
[32m■■■
[39m 8% | ETA: 6m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m17
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m17
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■
[39m 8% | ETA: 6m
#>
[32m✔
[39m Found
[34m17
[39m occurrences for species
[3mCerocorticium molare
[23m:
#>
#>
[32m■■■
[39m 8% | ETA: 6m
#>
[36m•
[39m Closest occurrence:
[34m19.39
[39m km
#>
#>
[32m■■■
[39m 8% | ETA: 6m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m5
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m5
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■
[39m 8% | ETA: 6m
#>
[32m✔
[39m Found
[34m5
[39m occurrences for species
[3mAporpium canescens
[23m:
#>
#>
[32m■■■
[39m 8% | ETA: 6m
#>
[36m•
[39m Closest occurrence:
[34m87.98
[39m km
#>
#>
[32m■■■
[39m 8% | ETA: 6m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m22
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m22
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■
[39m 8% | ETA: 6m
#>
[32m✔
[39m Found
[34m22
[39m occurrences for species
[3mHypochnicium analogum
[23m:
#>
#>
[32m■■■
[39m 8% | ETA: 6m
#>
[36m•
[39m Closest occurrence:
[34m85.74
[39m km
#>
#>
[32m■■■
[39m 8% | ETA: 6m
#>
[32m■■■■
[39m 9% | ETA: 7m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.41300497907184_48.3065482960645"
[34m
[39m
#>
#>
[32m■■■■
[39m 9% | ETA: 7m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[33m!
[39m No taxonomic names found at the specified taxonomic rank.Please check the `taxonomic_rank` parameter and your phyloseq object.
#>
#>
[32m■■■■
[39m 9% | ETA: 7m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.67380211958355_48.0858294742264"
[34m
[39m
#>
#>
[32m■■■■
[39m 9% | ETA: 7m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■
[39m 9% | ETA: 7m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■
[39m 9% | ETA: 7m
#>
[36m•
[39m Closest occurrence:
[34m59.1
[39m km
#>
#>
[32m■■■■
[39m 9% | ETA: 7m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m4
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m4
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■
[39m 9% | ETA: 7m
#>
[32m✔
[39m Found
[34m4
[39m occurrences for species
[3mBasidiodendron eyrei
[23m:
#>
#>
[32m■■■■
[39m 9% | ETA: 7m
#>
[36m•
[39m Closest occurrence:
[34m82.66
[39m km
#>
#>
[32m■■■■
[39m 9% | ETA: 7m
#>
[32m■■■■
[39m 11% | ETA: 6m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.10248538997036_48.0244206828945"
[34m
[39m
#>
#>
[32m■■■■
[39m 11% | ETA: 6m
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■
[39m 11% | ETA: 6m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■
[39m 11% | ETA: 6m
#>
[36m•
[39m Closest occurrence:
[34m47.23
[39m km
#>
#>
[32m■■■■
[39m 11% | ETA: 6m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.62739770158633_47.7723975198812"
[34m
[39m
#>
#>
[32m■■■■
[39m 11% | ETA: 6m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■
[39m 11% | ETA: 6m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■
[39m 11% | ETA: 6m
#>
[36m•
[39m Closest occurrence:
[34m87.92
[39m km
#>
#>
[32m■■■■
[39m 11% | ETA: 6m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.89559749705091_47.8883969741163"
[34m
[39m
#>
#>
[32m■■■■
[39m 11% | ETA: 6m
#> Cleaning suppress 14 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■
[39m 11% | ETA: 6m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■
[39m 11% | ETA: 6m
#>
[36m•
[39m Closest occurrence:
[34m66.86
[39m km
#>
#>
[32m■■■■
[39m 11% | ETA: 6m
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■
[39m 11% | ETA: 6m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m4
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m4
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■
[39m 11% | ETA: 6m
#>
[32m✔
[39m Found
[34m3
[39m occurrences for species
[3mBasidiodendron eyrei
[23m:
#>
#>
[32m■■■■
[39m 11% | ETA: 6m
#>
[36m•
[39m Closest occurrence:
[34m80.24
[39m km
#>
#>
[32m■■■■
[39m 11% | ETA: 6m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m5
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m5
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■
[39m 11% | ETA: 6m
#>
[32m✔
[39m Found
[34m5
[39m occurrences for species
[3mAporpium canescens
[23m:
#>
#>
[32m■■■■
[39m 11% | ETA: 6m
#>
[36m•
[39m Closest occurrence:
[34m80.11
[39m km
#>
#>
[32m■■■■
[39m 11% | ETA: 6m
#>
[32m■■■■■
[39m 13% | ETA: 6m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.98947961800922_48.2105077073803"
[34m
[39m
#>
#>
[32m■■■■■
[39m 13% | ETA: 6m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[33m!
[39m No taxonomic names found at the specified taxonomic rank.Please check the `taxonomic_rank` parameter and your phyloseq object.
#>
#>
[32m■■■■■
[39m 13% | ETA: 6m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.10859926853223_48.1355367288603"
[34m
[39m
#>
#>
[32m■■■■■
[39m 13% | ETA: 6m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■
[39m 13% | ETA: 6m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■
[39m 13% | ETA: 6m
#>
[36m•
[39m Closest occurrence:
[34m35.35
[39m km
#>
#>
[32m■■■■■
[39m 13% | ETA: 6m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m29
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m32
[34m
[39m
#> - Retention rate:
[34m
[34m90.6
[34m
[39m%
#>
#>
[32m■■■■■
[39m 13% | ETA: 6m
#>
[32m✔
[39m Found
[34m29
[39m occurrences for species
[3mCerocorticium molare
[23m:
#>
#>
[32m■■■■■
[39m 13% | ETA: 6m
#>
[36m•
[39m Closest occurrence:
[34m44.16
[39m km
#>
#>
[32m■■■■■
[39m 13% | ETA: 6m
#>
[32m■■■■■
[39m 15% | ETA: 5m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.81718503454801_48.0076999094129"
[34m
[39m
#>
#>
[32m■■■■■
[39m 15% | ETA: 5m
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■
[39m 15% | ETA: 5m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■
[39m 15% | ETA: 5m
#>
[36m•
[39m Closest occurrence:
[34m58.33
[39m km
#>
#>
[32m■■■■■
[39m 15% | ETA: 5m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.09363088409011_47.9287237625992"
[34m
[39m
#>
#>
[32m■■■■■
[39m 15% | ETA: 5m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■
[39m 15% | ETA: 5m
#>
[32m■■■■■■
[39m 16% | ETA: 5m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.072590251173_48.156568820368"
[34m
[39m
#>
#>
[32m■■■■■■
[39m 16% | ETA: 5m
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■
[39m 16% | ETA: 5m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■
[39m 16% | ETA: 5m
#>
[36m•
[39m Closest occurrence:
[34m34.28
[39m km
#>
#>
[32m■■■■■■
[39m 16% | ETA: 5m
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■
[39m 16% | ETA: 5m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.73909129099304_48.1608823232258"
[34m
[39m
#>
#>
[32m■■■■■■
[39m 16% | ETA: 5m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■
[39m 16% | ETA: 5m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■
[39m 16% | ETA: 5m
#>
[36m•
[39m Closest occurrence:
[34m50.07
[39m km
#>
#>
[32m■■■■■■
[39m 16% | ETA: 5m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.14755526425101_47.6199878353286"
[34m
[39m
#>
#>
[32m■■■■■■
[39m 16% | ETA: 5m
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■
[39m 16% | ETA: 5m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■
[39m 16% | ETA: 5m
#>
[36m•
[39m Closest occurrence:
[34m90.89
[39m km
#>
#>
[32m■■■■■■
[39m 16% | ETA: 5m
#>
[32m■■■■■■
[39m 18% | ETA: 4m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.37770098584691_48.1871568572318"
[34m
[39m
#>
#>
[32m■■■■■■
[39m 18% | ETA: 4m
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■
[39m 18% | ETA: 4m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■
[39m 18% | ETA: 4m
#>
[36m•
[39m Closest occurrence:
[34m28.25
[39m km
#>
#>
[32m■■■■■■
[39m 18% | ETA: 4m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m3
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m3
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■
[39m 18% | ETA: 4m
#>
[32m✔
[39m Found
[34m3
[39m occurrences for species
[3mBasidiodendron eyrei
[23m:
#>
#>
[32m■■■■■■
[39m 18% | ETA: 4m
#>
[36m•
[39m Closest occurrence:
[34m31.42
[39m km
#>
#>
[32m■■■■■■
[39m 18% | ETA: 4m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.98051097911836_47.9381896993138"
[34m
[39m
#>
#>
[32m■■■■■■
[39m 18% | ETA: 4m
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■
[39m 18% | ETA: 4m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■
[39m 18% | ETA: 4m
#>
[36m•
[39m Closest occurrence:
[34m59.26
[39m km
#>
#>
[32m■■■■■■
[39m 18% | ETA: 4m
#>
[32m■■■■■■■
[39m 20% | ETA: 4m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.81283052929986_48.0526133353925"
[34m
[39m
#>
#>
[32m■■■■■■■
[39m 20% | ETA: 4m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[33m!
[39m No taxonomic names found at the specified taxonomic rank.Please check the `taxonomic_rank` parameter and your phyloseq object.
#>
#>
[32m■■■■■■■
[39m 20% | ETA: 4m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.99680993774989_47.6418816288284"
[34m
[39m
#>
#>
[32m■■■■■■■
[39m 20% | ETA: 4m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■
[39m 20% | ETA: 4m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■
[39m 20% | ETA: 4m
#>
[36m•
[39m Closest occurrence:
[34m90.39
[39m km
#>
#>
[32m■■■■■■■
[39m 20% | ETA: 4m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.83464220925331_47.8423482310774"
[34m
[39m
#>
#>
[32m■■■■■■■
[39m 20% | ETA: 4m
#> Cleaning suppress 15 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■
[39m 20% | ETA: 4m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■
[39m 20% | ETA: 4m
#>
[36m•
[39m Closest occurrence:
[34m73.45
[39m km
#>
#>
[32m■■■■■■■
[39m 20% | ETA: 4m
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■
[39m 20% | ETA: 4m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m290
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m294
[34m
[39m
#> - Retention rate:
[34m
[34m98.6
[34m
[39m%
#>
#>
[32m■■■■■■■
[39m 20% | ETA: 4m
#>
[32m✔
[39m Found
[34m247
[39m occurrences for species
[3mStereum hirsutum
[23m:
#>
#>
[32m■■■■■■■
[39m 20% | ETA: 4m
#>
[36m•
[39m Closest occurrence:
[34m7.06
[39m km
#>
#>
[32m■■■■■■■
[39m 20% | ETA: 4m
#>
[32m■■■■■■■■
[39m 22% | ETA: 4m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.69752006974744_47.7733956662559"
[34m
[39m
#>
#>
[32m■■■■■■■■
[39m 22% | ETA: 4m
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■
[39m 22% | ETA: 4m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■
[39m 22% | ETA: 4m
#>
[32m✔
[39m Found
[34m0
[39m occurrences for species
[3mSistotrema oblongisporum
[23m:
#>
#>
[32m■■■■■■■■
[39m 22% | ETA: 4m
#>
[36m•
[39m Closest occurrence:
[34m101.8
[39m km
#>
#>
[32m■■■■■■■■
[39m 22% | ETA: 4m
#>
[32m■■■■■■■■
[39m 23% | ETA: 4m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.18707263796022_48.0727305136746"
[34m
[39m
#>
#>
[32m■■■■■■■■
[39m 23% | ETA: 4m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■
[39m 23% | ETA: 4m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■
[39m 23% | ETA: 4m
#>
[36m•
[39m Closest occurrence:
[34m40.59
[39m km
#>
#>
[32m■■■■■■■■
[39m 23% | ETA: 4m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.03529772211249_47.9428224171394"
[34m
[39m
#>
#>
[32m■■■■■■■■
[39m 23% | ETA: 4m
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■
[39m 23% | ETA: 4m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■
[39m 23% | ETA: 4m
#>
[36m•
[39m Closest occurrence:
[34m57.38
[39m km
#>
#>
[32m■■■■■■■■
[39m 23% | ETA: 4m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m22
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m22
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■
[39m 23% | ETA: 4m
#>
[32m✔
[39m Found
[34m22
[39m occurrences for species
[3mHypochnicium analogum
[23m:
#>
#>
[32m■■■■■■■■
[39m 23% | ETA: 4m
#>
[36m•
[39m Closest occurrence:
[34m68.47
[39m km
#>
#>
[32m■■■■■■■■
[39m 23% | ETA: 4m
#>
[32m■■■■■■■■
[39m 24% | ETA: 4m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.04873709294924_48.1035338267995"
[34m
[39m
#>
#>
[32m■■■■■■■■
[39m 24% | ETA: 4m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■
[39m 24% | ETA: 4m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■
[39m 24% | ETA: 4m
#>
[36m•
[39m Closest occurrence:
[34m40.36
[39m km
#>
#>
[32m■■■■■■■■
[39m 24% | ETA: 4m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■
[39m 24% | ETA: 4m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mSistotrema oblongisporum
[23m:
#>
#>
[32m■■■■■■■■
[39m 24% | ETA: 4m
#>
[36m•
[39m Closest occurrence:
[34m57.71
[39m km
#>
#>
[32m■■■■■■■■
[39m 24% | ETA: 4m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.32470977668872_47.9794182659762"
[34m
[39m
#>
#>
[32m■■■■■■■■
[39m 24% | ETA: 4m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■
[39m 24% | ETA: 4m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■
[39m 24% | ETA: 4m
#>
[36m•
[39m Closest occurrence:
[34m50.51
[39m km
#>
#>
[32m■■■■■■■■
[39m 24% | ETA: 4m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.02240761657395_47.8051860813469"
[34m
[39m
#>
#>
[32m■■■■■■■■
[39m 24% | ETA: 4m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■
[39m 24% | ETA: 4m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■
[39m 24% | ETA: 4m
#>
[36m•
[39m Closest occurrence:
[34m72.32
[39m km
#>
#>
[32m■■■■■■■■
[39m 24% | ETA: 4m
#>
[32m■■■■■■■■■
[39m 26% | ETA: 3m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.97320059738749_48.2541344601592"
[34m
[39m
#>
#>
[32m■■■■■■■■■
[39m 26% | ETA: 3m
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■
[39m 26% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■
[39m 26% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m30.07
[39m km
#>
#>
[32m■■■■■■■■■
[39m 26% | ETA: 3m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m22
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m22
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■
[39m 26% | ETA: 3m
#>
[32m✔
[39m Found
[34m22
[39m occurrences for species
[3mHypochnicium analogum
[23m:
#>
#>
[32m■■■■■■■■■
[39m 26% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m51.91
[39m km
#>
#>
[32m■■■■■■■■■
[39m 26% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.61798250645556_48.1921729574156"
[34m
[39m
#>
#>
[32m■■■■■■■■■
[39m 26% | ETA: 3m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■
[39m 26% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■
[39m 26% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m55.71
[39m km
#>
#>
[32m■■■■■■■■■
[39m 26% | ETA: 3m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m396
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m409
[34m
[39m
#> - Retention rate:
[34m
[34m96.8
[34m
[39m%
#>
#>
[32m■■■■■■■■■
[39m 26% | ETA: 3m
#>
[32m✔
[39m Found
[34m355
[39m occurrences for species
[3mStereum hirsutum
[23m:
#>
#>
[32m■■■■■■■■■
[39m 26% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m32.33
[39m km
#>
#>
[32m■■■■■■■■■
[39m 26% | ETA: 3m
#>
[32m■■■■■■■■■
[39m 28% | ETA: 4m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.94415255168303_48.1537442739188"
[34m
[39m
#>
#>
[32m■■■■■■■■■
[39m 28% | ETA: 4m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■
[39m 28% | ETA: 4m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■
[39m 28% | ETA: 4m
#>
[36m•
[39m Closest occurrence:
[34m39.68
[39m km
#>
#>
[32m■■■■■■■■■
[39m 28% | ETA: 4m
#>
[32m■■■■■■■■■■
[39m 28% | ETA: 3m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.93731080434842_48.2071861542162"
[34m
[39m
#>
#>
[32m■■■■■■■■■■
[39m 28% | ETA: 3m
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■
[39m 28% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■
[39m 28% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m35.58
[39m km
#>
#>
[32m■■■■■■■■■■
[39m 28% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.2134615757523_47.9052225851454"
[34m
[39m
#>
#>
[32m■■■■■■■■■■
[39m 28% | ETA: 3m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■
[39m 28% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■
[39m 28% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m58.84
[39m km
#>
#>
[32m■■■■■■■■■■
[39m 28% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.01400697005933_47.7449330250727"
[34m
[39m
#>
#>
[32m■■■■■■■■■■
[39m 28% | ETA: 3m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■
[39m 28% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■
[39m 28% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m78.96
[39m km
#>
#>
[32m■■■■■■■■■■
[39m 28% | ETA: 3m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m20
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m20
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■
[39m 28% | ETA: 3m
#>
[32m✔
[39m Found
[34m17
[39m occurrences for species
[3mCerocorticium molare
[23m:
#>
#>
[32m■■■■■■■■■■
[39m 28% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m23.22
[39m km
#>
#>
[32m■■■■■■■■■■
[39m 28% | ETA: 3m
#>
[32m■■■■■■■■■■
[39m 31% | ETA: 3m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.87217533522287_47.9388758652341"
[34m
[39m
#>
#>
[32m■■■■■■■■■■
[39m 31% | ETA: 3m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■
[39m 31% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■
[39m 31% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m62.64
[39m km
#>
#>
[32m■■■■■■■■■■
[39m 31% | ETA: 3m
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■
[39m 31% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.99000702019037_48.4423538973677"
[34m
[39m
#>
#>
[32m■■■■■■■■■■
[39m 31% | ETA: 3m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[33m!
[39m No taxonomic names found at the specified taxonomic rank.Please check the `taxonomic_rank` parameter and your phyloseq object.
#>
#>
[32m■■■■■■■■■■
[39m 31% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.94970331134996_47.7916663238243"
[34m
[39m
#>
#>
[32m■■■■■■■■■■
[39m 31% | ETA: 3m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■
[39m 31% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■
[39m 31% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m75.34
[39m km
#>
#>
[32m■■■■■■■■■■
[39m 31% | ETA: 3m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■
[39m 31% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mSistotrema oblongisporum
[23m:
#>
#>
[32m■■■■■■■■■■
[39m 31% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m87.98
[39m km
#>
#>
[32m■■■■■■■■■■
[39m 31% | ETA: 3m
#>
[32m■■■■■■■■■■■
[39m 33% | ETA: 3m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.08895942315855_47.7706952299571"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■
[39m 33% | ETA: 3m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■
[39m 33% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.55108351506737_47.6649345393271"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■
[39m 33% | ETA: 3m
#> Cleaning suppress 15 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■
[39m 33% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■
[39m 33% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m87.73
[39m km
#>
#>
[32m■■■■■■■■■■■
[39m 33% | ETA: 3m
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■
[39m 33% | ETA: 3m
#>
[32m■■■■■■■■■■■
[39m 34% | ETA: 3m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.00930627608884_48.3051877310075"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■
[39m 34% | ETA: 3m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m405
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m418
[34m
[39m
#> - Retention rate:
[34m
[34m96.9
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■
[39m 34% | ETA: 3m
#>
[32m✔
[39m Found
[34m375
[39m occurrences for species
[3mStereum hirsutum
[23m:
#>
#>
[32m■■■■■■■■■■■
[39m 34% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m12.78
[39m km
#>
#>
[32m■■■■■■■■■■■
[39m 34% | ETA: 3m
#>
[32m■■■■■■■■■■■■
[39m 35% | ETA: 3m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.11554181386133_48.1108371029796"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■
[39m 35% | ETA: 3m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[33m!
[39m No taxonomic names found at the specified taxonomic rank.Please check the `taxonomic_rank` parameter and your phyloseq object.
#>
#>
[32m■■■■■■■■■■■■
[39m 35% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.02363897488194_48.3986220529725"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■
[39m 35% | ETA: 3m
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■
[39m 35% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■
[39m 35% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m19.21
[39m km
#>
#>
[32m■■■■■■■■■■■■
[39m 35% | ETA: 3m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m429
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m442
[34m
[39m
#> - Retention rate:
[34m
[34m97.1
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■
[39m 35% | ETA: 3m
#>
[32m✔
[39m Found
[34m395
[39m occurrences for species
[3mStereum hirsutum
[23m:
#>
#>
[32m■■■■■■■■■■■■
[39m 35% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m3.13
[39m km
#>
#>
[32m■■■■■■■■■■■■
[39m 35% | ETA: 3m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m28
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m30
[34m
[39m
#> - Retention rate:
[34m
[34m93.3
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■
[39m 35% | ETA: 3m
#>
[32m✔
[39m Found
[34m28
[39m occurrences for species
[3mCerocorticium molare
[23m:
#>
#>
[32m■■■■■■■■■■■■
[39m 35% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m21.26
[39m km
#>
#>
[32m■■■■■■■■■■■■
[39m 35% | ETA: 3m
#>
[32m■■■■■■■■■■■■
[39m 36% | ETA: 3m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.61765590179436_47.9691758520888"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■
[39m 36% | ETA: 3m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■
[39m 36% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■
[39m 36% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m71.11
[39m km
#>
#>
[32m■■■■■■■■■■■■
[39m 36% | ETA: 3m
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■
[39m 36% | ETA: 3m
#>
[32m■■■■■■■■■■■■
[39m 37% | ETA: 3m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.17241729636771_48.5128816675995"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■
[39m 37% | ETA: 3m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m3
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m3
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■
[39m 37% | ETA: 3m
#>
[32m✔
[39m Found
[34m3
[39m occurrences for species
[3mBasidiodendron eyrei
[23m:
#>
#>
[32m■■■■■■■■■■■■
[39m 37% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m39.32
[39m km
#>
#>
[32m■■■■■■■■■■■■
[39m 37% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.9513526520733_48.2123998289092"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■
[39m 37% | ETA: 3m
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■
[39m 37% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■
[39m 37% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m34.44
[39m km
#>
#>
[32m■■■■■■■■■■■■
[39m 37% | ETA: 3m
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■
[39m 37% | ETA: 3m
#>
[32m■■■■■■■■■■■■■
[39m 39% | ETA: 3m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.95878256104368_48.2285389756858"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■
[39m 39% | ETA: 3m
#> Cleaning suppress 15 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■
[39m 39% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■
[39m 39% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m32.79
[39m km
#>
#>
[32m■■■■■■■■■■■■■
[39m 39% | ETA: 3m
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■■
[39m 39% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.00383551844183_48.2247677686525"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■
[39m 39% | ETA: 3m
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m394
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m407
[34m
[39m
#> - Retention rate:
[34m
[34m96.8
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■
[39m 39% | ETA: 3m
#>
[32m✔
[39m Found
[34m349
[39m occurrences for species
[3mStereum hirsutum
[23m:
#>
#>
[32m■■■■■■■■■■■■■
[39m 39% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m19.12
[39m km
#>
#>
[32m■■■■■■■■■■■■■
[39m 39% | ETA: 3m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m3
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m3
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■
[39m 39% | ETA: 3m
#>
[32m✔
[39m Found
[34m3
[39m occurrences for species
[3mBasidiodendron eyrei
[23m:
#>
#>
[32m■■■■■■■■■■■■■
[39m 39% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m53.99
[39m km
#>
#>
[32m■■■■■■■■■■■■■
[39m 39% | ETA: 3m
#>
[32m■■■■■■■■■■■■■
[39m 40% | ETA: 3m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.00591215086395_47.9205997013881"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■
[39m 40% | ETA: 3m
#> Cleaning suppress 14 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■
[39m 40% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■
[39m 40% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m60.42
[39m km
#>
#>
[32m■■■■■■■■■■■■■
[39m 40% | ETA: 3m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m320
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m329
[34m
[39m
#> - Retention rate:
[34m
[34m97.3
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■
[39m 40% | ETA: 3m
#>
[32m✔
[39m Found
[34m302
[39m occurrences for species
[3mStereum hirsutum
[23m:
#>
#>
[32m■■■■■■■■■■■■■
[39m 40% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m1.01
[39m km
#>
#>
[32m■■■■■■■■■■■■■
[39m 40% | ETA: 3m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m3
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m3
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■
[39m 40% | ETA: 3m
#>
[32m✔
[39m Found
[34m3
[39m occurrences for species
[3mBasidiodendron eyrei
[23m:
#>
#>
[32m■■■■■■■■■■■■■
[39m 40% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m71.76
[39m km
#>
#>
[32m■■■■■■■■■■■■■
[39m 40% | ETA: 3m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m499
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m500
[34m
[39m
#> - Retention rate:
[34m
[34m99.8
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■
[39m 40% | ETA: 3m
#>
[32m✔
[39m Found
[34m459
[39m occurrences for species
[3mFomes fomentarius
[23m:
#>
#>
[32m■■■■■■■■■■■■■
[39m 40% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m2.64
[39m km
#>
#>
[32m■■■■■■■■■■■■■
[39m 40% | ETA: 3m
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.10996550836034_47.8353477698866"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m67.59
[39m km
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.54517702862141_47.8842230750576"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[33m!
[39m No taxonomic names found at the specified taxonomic rank.Please check the `taxonomic_rank` parameter and your phyloseq object.
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.53651143671127_48.3527578755143"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m20.99
[39m km
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m429
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m442
[34m
[39m
#> - Retention rate:
[34m
[34m97.1
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[32m✔
[39m Found
[34m352
[39m occurrences for species
[3mStereum hirsutum
[23m:
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m1.8
[39m km
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m3
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m3
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[32m✔
[39m Found
[34m3
[39m occurrences for species
[3mBasidiodendron eyrei
[23m:
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m12.23
[39m km
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mSistotrema oblongisporum
[23m:
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m12.19
[39m km
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m479
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m500
[34m
[39m
#> - Retention rate:
[34m
[34m95.8
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[32m✔
[39m Found
[34m423
[39m occurrences for species
[3mFomes fomentarius
[23m:
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m3.34
[39m km
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m28
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m30
[34m
[39m
#> - Retention rate:
[34m
[34m93.3
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[32m✔
[39m Found
[34m28
[39m occurrences for species
[3mCerocorticium molare
[23m:
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m10.61
[39m km
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m5
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m5
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[32m✔
[39m Found
[34m5
[39m occurrences for species
[3mAporpium canescens
[23m:
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m9.94
[39m km
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m22
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m22
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[32m✔
[39m Found
[34m22
[39m occurrences for species
[3mHypochnicium analogum
[23m:
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m9.79
[39m km
#>
#>
[32m■■■■■■■■■■■■■
[39m 41% | ETA: 3m
#>
[32m■■■■■■■■■■■■■■
[39m 43% | ETA: 3m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.92775574890126_48.0265984292808"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■
[39m 43% | ETA: 3m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[33m!
[39m No taxonomic names found at the specified taxonomic rank.Please check the `taxonomic_rank` parameter and your phyloseq object.
#>
#>
[32m■■■■■■■■■■■■■■
[39m 43% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.04267114994201_48.0752998656957"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■
[39m 43% | ETA: 3m
#> Cleaning suppress 14 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■
[39m 43% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■
[39m 43% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m43.41
[39m km
#>
#>
[32m■■■■■■■■■■■■■■
[39m 43% | ETA: 3m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m348
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m376
[34m
[39m
#> - Retention rate:
[34m
[34m92.6
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■
[39m 43% | ETA: 3m
#>
[32m✔
[39m Found
[34m322
[39m occurrences for species
[3mStereum hirsutum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■
[39m 43% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m7.64
[39m km
#>
#>
[32m■■■■■■■■■■■■■■
[39m 43% | ETA: 3m
#>
[32m■■■■■■■■■■■■■■
[39m 45% | ETA: 3m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.21486917645194_48.2277415306806"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■
[39m 45% | ETA: 3m
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■
[39m 45% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■
[39m 45% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m23.27
[39m km
#>
#>
[32m■■■■■■■■■■■■■■
[39m 45% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.8669823502909_48.2482526150614"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■
[39m 45% | ETA: 3m
#> Cleaning suppress 15 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■
[39m 45% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■
[39m 45% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m36.7
[39m km
#>
#>
[32m■■■■■■■■■■■■■■
[39m 45% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.22279048379384_48.1224181889918"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■
[39m 45% | ETA: 3m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■
[39m 45% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■
[39m 45% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m34.74
[39m km
#>
#>
[32m■■■■■■■■■■■■■■
[39m 45% | ETA: 3m
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■■■
[39m 45% | ETA: 3m
#>
[32m■■■■■■■■■■■■■■■
[39m 47% | ETA: 3m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.95082071766417_47.9141239825768"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■
[39m 47% | ETA: 3m
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■■■■
[39m 47% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.76448733821134_48.2720922653541"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■
[39m 47% | ETA: 3m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■
[39m 47% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■
[39m 47% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m41.99
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■
[39m 47% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.80482987676803_47.9858285138646"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■
[39m 47% | ETA: 3m
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■
[39m 47% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■
[39m 47% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m60.84
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■
[39m 47% | ETA: 3m
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■■■■
[39m 47% | ETA: 3m
#>
[32m■■■■■■■■■■■■■■■■
[39m 49% | ETA: 3m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.21301146400543_47.9455692631358"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 49% | ETA: 3m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 49% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 49% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m54.38
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 49% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.02633412695458_47.5106639941574"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 49% | ETA: 3m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[33m!
[39m No occurrences found for
[3m
[3mStereum ostrea
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 49% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.0977257618402_48.013097328282"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 49% | ETA: 3m
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 49% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 49% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m48.54
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 49% | ETA: 3m
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 49% | ETA: 3m
#>
[32m■■■■■■■■■■■■■■■■
[39m 51% | ETA: 3m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.66010988643086_47.7802982196348"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 51% | ETA: 3m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[33m!
[39m No taxonomic names found at the specified taxonomic rank.Please check the `taxonomic_rank` parameter and your phyloseq object.
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 51% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.70585273872451_47.873364364895"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 51% | ETA: 3m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 51% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 51% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m75.33
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 51% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.05683006872538_47.5872691098922"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 51% | ETA: 3m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[33m!
[39m No taxonomic names found at the specified taxonomic rank.Please check the `taxonomic_rank` parameter and your phyloseq object.
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 51% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.26746408264712_48.5297864057125"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 51% | ETA: 3m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 51% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.0473392566573_47.7693203227088"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 51% | ETA: 3m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 51% | ETA: 3m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.26365867680693_47.9318724247938"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 51% | ETA: 3m
#> Cleaning suppress 15 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 51% | ETA: 3m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 51% | ETA: 3m
#>
[36m•
[39m Closest occurrence:
[34m55.69
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■
[39m 51% | ETA: 3m
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.10478195750024_48.157272515262"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m33.22
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.12134960931142_47.7458973779576"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.97801286557103_48.1084283098884"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m42.37
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m361
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m386
[34m
[39m
#> - Retention rate:
[34m
[34m93.5
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[32m✔
[39m Found
[34m326
[39m occurrences for species
[3mStereum hirsutum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m13.44
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m3
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m3
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[32m✔
[39m Found
[34m3
[39m occurrences for species
[3mBasidiodendron eyrei
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m61.16
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mSistotrema oblongisporum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m61.6
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m479
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m500
[34m
[39m
#> - Retention rate:
[34m
[34m95.8
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[32m✔
[39m Found
[34m419
[39m occurrences for species
[3mFomes fomentarius
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m12.75
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m29
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m32
[34m
[39m
#> - Retention rate:
[34m
[34m90.6
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[32m✔
[39m Found
[34m29
[39m occurrences for species
[3mCerocorticium molare
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m50.04
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m5
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m5
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[32m✔
[39m Found
[34m5
[39m occurrences for species
[3mAporpium canescens
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m59.35
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m22
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m22
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[32m✔
[39m Found
[34m22
[39m occurrences for species
[3mHypochnicium analogum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m59.16
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 55% | ETA: 2m
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.0344363430822_48.0150211800336"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m49.84
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m481
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m500
[34m
[39m
#> - Retention rate:
[34m
[34m96.2
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
[32m✔
[39m Found
[34m433
[39m occurrences for species
[3mFomes fomentarius
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m7.64
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
[32m■■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.98193454259987_48.1117028843329"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m41.91
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.38486866827156_48.0830812797844"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m39.65
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.25967855176618_47.7095400462268"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[33m!
[39m No taxonomic names found at the specified taxonomic rank.Please check the `taxonomic_rank` parameter and your phyloseq object.
#>
#>
[32m■■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.14975825350737_48.1882412243403"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[33m!
[39m No taxonomic names found at the specified taxonomic rank.Please check the `taxonomic_rank` parameter and your phyloseq object.
#>
#>
[32m■■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.11124486582086_47.932212825658"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m328
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m336
[34m
[39m
#> - Retention rate:
[34m
[34m97.6
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
[32m✔
[39m Found
[34m309
[39m occurrences for species
[3mStereum hirsutum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m5.54
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m497
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m500
[34m
[39m
#> - Retention rate:
[34m
[34m99.4
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
[32m✔
[39m Found
[34m468
[39m occurrences for species
[3mFomes fomentarius
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m8.38
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■
[39m 58% | ETA: 2m
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 62% | ETA: 2m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.89034854725223_47.9848851505099"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 62% | ETA: 2m
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m483
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m500
[34m
[39m
#> - Retention rate:
[34m
[34m96.6
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 62% | ETA: 2m
#>
[32m✔
[39m Found
[34m416
[39m occurrences for species
[3mFomes fomentarius
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 62% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m0.74
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 62% | ETA: 2m
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 62% | ETA: 2m
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 63% | ETA: 2m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.22210697851637_48.0080408784101"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 63% | ETA: 2m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 63% | ETA: 2m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 63% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m47.4
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 63% | ETA: 2m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.47753313342314_48.0248602132255"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 63% | ETA: 2m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 63% | ETA: 2m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.96886124475399_47.8003134898826"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 63% | ETA: 2m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 63% | ETA: 2m
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 65% | ETA: 2m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.08677795798345_48.2466780129764"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 65% | ETA: 2m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 65% | ETA: 2m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.92360977763677_48.0680848975123"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 65% | ETA: 2m
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 65% | ETA: 2m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 65% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m48.32
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 65% | ETA: 2m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.08483751490949_47.9054595035764"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 65% | ETA: 2m
#> Cleaning suppress 15 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 65% | ETA: 2m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 65% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m60.36
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 65% | ETA: 2m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m319
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m323
[34m
[39m
#> - Retention rate:
[34m
[34m98.8
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 65% | ETA: 2m
#>
[32m✔
[39m Found
[34m303
[39m occurrences for species
[3mStereum hirsutum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 65% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m5.92
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 65% | ETA: 2m
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■
[39m 65% | ETA: 2m
#>
[32m■■■■■■■■■■■■■■■■■■■■■
[39m 67% | ETA: 2m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.21262039916976_48.1417506121062"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■
[39m 67% | ETA: 2m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■
[39m 67% | ETA: 2m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■
[39m 67% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m32.71
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■
[39m 67% | ETA: 2m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.20974252395115_47.6942082570681"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■
[39m 67% | ETA: 2m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■
[39m 67% | ETA: 2m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■
[39m 67% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m82.27
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■
[39m 67% | ETA: 2m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.99237942103737_48.0474850690346"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■
[39m 67% | ETA: 2m
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■
[39m 67% | ETA: 2m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■
[39m 67% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m47.79
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■
[39m 67% | ETA: 2m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m3
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m3
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■
[39m 67% | ETA: 2m
#>
[32m✔
[39m Found
[34m3
[39m occurrences for species
[3mBasidiodendron eyrei
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■
[39m 67% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m63.71
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■
[39m 67% | ETA: 2m
#>
[32m■■■■■■■■■■■■■■■■■■■■■■
[39m 69% | ETA: 2m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.09722978390305_47.7374371507058"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■
[39m 69% | ETA: 2m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■
[39m 69% | ETA: 2m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■
[39m 69% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m78.47
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■
[39m 69% | ETA: 2m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.3345765221665_48.1494057174173"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■
[39m 69% | ETA: 2m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■
[39m 69% | ETA: 2m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■
[39m 69% | ETA: 2m
#>
[36m•
[39m Closest occurrence:
[34m31.76
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■
[39m 69% | ETA: 2m
#>
[32m■■■■■■■■■■■■■■■■■■■■■■
[39m 71% | ETA: 1m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.92912776728871_47.6874963130708"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■
[39m 71% | ETA: 1m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■
[39m 71% | ETA: 1m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■
[39m 71% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m86.83
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■
[39m 71% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m17
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m17
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■
[39m 71% | ETA: 1m
#>
[32m✔
[39m Found
[34m17
[39m occurrences for species
[3mCerocorticium molare
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■
[39m 71% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m18.4
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■
[39m 71% | ETA: 1m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.18926957729331_48.0142106719136"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■
[39m 71% | ETA: 1m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■
[39m 71% | ETA: 1m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■
[39m 71% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m47
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■
[39m 71% | ETA: 1m
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.26336527120883_47.8720930459586"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m62.34
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m3
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m3
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[32m✔
[39m Found
[34m3
[39m occurrences for species
[3mBasidiodendron eyrei
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m63.87
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.94067199508163_47.8309608522896"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m71.45
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m270
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m273
[34m
[39m
#> - Retention rate:
[34m
[34m98.9
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[32m✔
[39m Found
[34m243
[39m occurrences for species
[3mStereum hirsutum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m2.34
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m3
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m3
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[32m✔
[39m Found
[34m3
[39m occurrences for species
[3mBasidiodendron eyrei
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m82.24
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mSistotrema oblongisporum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m84.94
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m499
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m500
[34m
[39m
#> - Retention rate:
[34m
[34m99.8
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[32m✔
[39m Found
[34m453
[39m occurrences for species
[3mFomes fomentarius
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m5.98
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m26
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m26
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[32m✔
[39m Found
[34m25
[39m occurrences for species
[3mCerocorticium molare
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m33.42
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m5
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m5
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[32m✔
[39m Found
[34m5
[39m occurrences for species
[3mAporpium canescens
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m82.74
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m22
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m22
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[32m✔
[39m Found
[34m22
[39m occurrences for species
[3mHypochnicium analogum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m82.24
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 72% | ETA: 1m
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 74% | ETA: 1m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.92255728495032_48.1350489396163"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 74% | ETA: 1m
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 74% | ETA: 1m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 74% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m42.31
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 74% | ETA: 1m
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 74% | ETA: 1m
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 74% | ETA: 1m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.84291346884393_48.230675158785"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 74% | ETA: 1m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 74% | ETA: 1m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 74% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m39.28
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 74% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m4
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m4
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 74% | ETA: 1m
#>
[32m✔
[39m Found
[34m4
[39m occurrences for species
[3mBasidiodendron eyrei
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 74% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m64.98
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 74% | ETA: 1m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.78865262660137_47.6626990515116"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 74% | ETA: 1m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 74% | ETA: 1m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 74% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m93.04
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 74% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m17
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m17
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 74% | ETA: 1m
#>
[32m✔
[39m Found
[34m4
[39m occurrences for species
[3mCerocorticium molare
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 74% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m22.87
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■
[39m 74% | ETA: 1m
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.84089171409044_47.819437010156"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[33m!
[39m No taxonomic names found at the specified taxonomic rank.Please check the `taxonomic_rank` parameter and your phyloseq object.
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.64874491436582_48.2635267395648"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m50.22
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.86189242063565_48.220037948909"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[33m!
[39m No taxonomic names found at the specified taxonomic rank.Please check the `taxonomic_rank` parameter and your phyloseq object.
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.88829160115624_48.2407535678774"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m35.9
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m408
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m421
[34m
[39m
#> - Retention rate:
[34m
[34m96.9
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[32m✔
[39m Found
[34m358
[39m occurrences for species
[3mStereum hirsutum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m23.11
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m4
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m4
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[32m✔
[39m Found
[34m4
[39m occurrences for species
[3mBasidiodendron eyrei
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m61.43
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mSistotrema oblongisporum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m60.72
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m479
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m500
[34m
[39m
#> - Retention rate:
[34m
[34m95.8
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[32m✔
[39m Found
[34m432
[39m occurrences for species
[3mFomes fomentarius
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m24.11
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m28
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m30
[34m
[39m
#> - Retention rate:
[34m
[34m93.3
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[32m✔
[39m Found
[34m28
[39m occurrences for species
[3mCerocorticium molare
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m40.84
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m5
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m5
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[32m✔
[39m Found
[34m5
[39m occurrences for species
[3mAporpium canescens
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m58.59
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m22
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m22
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[32m✔
[39m Found
[34m22
[39m occurrences for species
[3mHypochnicium analogum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m58.33
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■
[39m 76% | ETA: 1m
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 79% | ETA: 1m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.89266733470054_47.713745844622"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 79% | ETA: 1m
#> Cleaning suppress 15 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 79% | ETA: 1m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 79% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m84.93
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 79% | ETA: 1m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.04542542654565_48.2765821721141"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 79% | ETA: 1m
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 79% | ETA: 1m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 79% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m24.47
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 79% | ETA: 1m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.19569098404865_48.0006251880824"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 79% | ETA: 1m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 79% | ETA: 1m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 79% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m48.43
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 79% | ETA: 1m
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 81% | ETA: 1m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.95822346972963_47.9844226351225"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 81% | ETA: 1m
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m337
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m362
[34m
[39m
#> - Retention rate:
[34m
[34m93.1
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 81% | ETA: 1m
#>
[32m✔
[39m Found
[34m304
[39m occurrences for species
[3mStereum hirsutum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 81% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m5.36
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 81% | ETA: 1m
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 82% | ETA: 1m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.72011790799765_48.0882856451857"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 82% | ETA: 1m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 82% | ETA: 1m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 82% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m56.36
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 82% | ETA: 1m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.0517074575817_48.0257845792447"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 82% | ETA: 1m
#> Cleaning suppress 15 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 82% | ETA: 1m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 82% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m48.27
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 82% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m335
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m361
[34m
[39m
#> - Retention rate:
[34m
[34m92.8
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 82% | ETA: 1m
#>
[32m✔
[39m Found
[34m321
[39m occurrences for species
[3mStereum hirsutum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 82% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m7.54
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 82% | ETA: 1m
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m481
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m500
[34m
[39m
#> - Retention rate:
[34m
[34m96.2
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 82% | ETA: 1m
#>
[32m✔
[39m Found
[34m445
[39m occurrences for species
[3mFomes fomentarius
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 82% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m7.54
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 82% | ETA: 1m
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 83% | ETA: 1m
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.91164010941773_47.8339571479273"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 83% | ETA: 1m
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 83% | ETA: 1m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 83% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m71.93
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 83% | ETA: 1m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.11371997224307_47.8992814180577"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 83% | ETA: 1m
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 83% | ETA: 1m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 83% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m60.56
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 83% | ETA: 1m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.42537009180682_47.761271763598"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 83% | ETA: 1m
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[33m!
[39m No taxonomic names found at the specified taxonomic rank.Please check the `taxonomic_rank` parameter and your phyloseq object.
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 83% | ETA: 1m
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.08497168826285_47.8496553354218"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 83% | ETA: 1m
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 83% | ETA: 1m
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 83% | ETA: 1m
#>
[36m•
[39m Closest occurrence:
[34m66.4
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 83% | ETA: 1m
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 86% | ETA: 47s
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.66314369355006_48.2911682806016"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 86% | ETA: 47s
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 86% | ETA: 47s
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 86% | ETA: 47s
#>
[36m•
[39m Closest occurrence:
[34m48.13
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 86% | ETA: 47s
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 86% | ETA: 47s
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mSistotrema oblongisporum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 86% | ETA: 47s
#>
[36m•
[39m Closest occurrence:
[34m75.27
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 86% | ETA: 47s
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.04988035679387_47.8342792934421"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 86% | ETA: 47s
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 86% | ETA: 47s
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 86% | ETA: 47s
#>
[36m•
[39m Closest occurrence:
[34m68.67
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 86% | ETA: 47s
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.21456765036328_48.0579548920752"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[36m•
[39m Closest occurrence:
[34m41.93
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m351
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m373
[34m
[39m
#> - Retention rate:
[34m
[34m94.1
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[32m✔
[39m Found
[34m333
[39m occurrences for species
[3mStereum hirsutum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[36m•
[39m Closest occurrence:
[34m5.41
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m3
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m3
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[32m✔
[39m Found
[34m3
[39m occurrences for species
[3mBasidiodendron eyrei
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[36m•
[39m Closest occurrence:
[34m49.98
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mSistotrema oblongisporum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[36m•
[39m Closest occurrence:
[34m52.48
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m479
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m500
[34m
[39m
#> - Retention rate:
[34m
[34m95.8
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[32m✔
[39m Found
[34m450
[39m occurrences for species
[3mFomes fomentarius
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[36m•
[39m Closest occurrence:
[34m5.41
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m29
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m32
[34m
[39m
#> - Retention rate:
[34m
[34m90.6
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[32m✔
[39m Found
[34m29
[39m occurrences for species
[3mCerocorticium molare
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[36m•
[39m Closest occurrence:
[34m45.44
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m5
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m5
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[32m✔
[39m Found
[34m5
[39m occurrences for species
[3mAporpium canescens
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[36m•
[39m Closest occurrence:
[34m50.29
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m22
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m22
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[32m✔
[39m Found
[34m22
[39m occurrences for species
[3mHypochnicium analogum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[36m•
[39m Closest occurrence:
[34m49.98
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 42s
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 41s
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.40787385250057_47.9039893031458"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 41s
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 41s
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 41s
#>
[36m•
[39m Closest occurrence:
[34m59.55
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 41s
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m339
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m339
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 41s
#>
[32m✔
[39m Found
[34m290
[39m occurrences for species
[3mStereum hirsutum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 41s
#>
[36m•
[39m Closest occurrence:
[34m5.23
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 88% | ETA: 41s
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 89% | ETA: 38s
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.08989075561208_47.879034129157"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 89% | ETA: 38s
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[33m!
[39m No taxonomic names found at the specified taxonomic rank.Please check the `taxonomic_rank` parameter and your phyloseq object.
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 89% | ETA: 38s
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.27836280912767_48.2920220360792"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 89% | ETA: 38s
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m3
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m3
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 89% | ETA: 38s
#>
[32m✔
[39m Found
[34m3
[39m occurrences for species
[3mBasidiodendron eyrei
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 89% | ETA: 38s
#>
[36m•
[39m Closest occurrence:
[34m32.36
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 89% | ETA: 38s
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 91% | ETA: 33s
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.08531330938071_48.0299358708191"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 91% | ETA: 33s
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 91% | ETA: 33s
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 91% | ETA: 33s
#>
[36m•
[39m Closest occurrence:
[34m47.02
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 91% | ETA: 33s
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m5
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m5
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 91% | ETA: 33s
#>
[32m✔
[39m Found
[34m5
[39m occurrences for species
[3mAporpium canescens
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 91% | ETA: 33s
#>
[36m•
[39m Closest occurrence:
[34m58.96
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 91% | ETA: 33s
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.02151679844273_47.7133357799404"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 91% | ETA: 33s
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[33m!
[39m No occurrences found for
[3m
[3mOssicaulis lachnopus
[3m
[23m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 91% | ETA: 33s
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.00445894662567_47.9979393362743"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 91% | ETA: 33s
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m481
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m500
[34m
[39m
#> - Retention rate:
[34m
[34m96.2
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 91% | ETA: 33s
#>
[32m✔
[39m Found
[34m434
[39m occurrences for species
[3mFomes fomentarius
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 91% | ETA: 33s
#>
[36m•
[39m Closest occurrence:
[34m5.16
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 91% | ETA: 33s
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 93% | ETA: 25s
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.12072220210142_47.9575527930324"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 93% | ETA: 25s
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 93% | ETA: 25s
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 93% | ETA: 25s
#>
[36m•
[39m Closest occurrence:
[34m54.11
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 93% | ETA: 25s
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m486
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m500
[34m
[39m
#> - Retention rate:
[34m
[34m97.2
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 93% | ETA: 25s
#>
[32m✔
[39m Found
[34m441
[39m occurrences for species
[3mFomes fomentarius
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 93% | ETA: 25s
#>
[36m•
[39m Closest occurrence:
[34m9.87
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 93% | ETA: 25s
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 93% | ETA: 23s
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.94746988543012_47.8187319642872"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 93% | ETA: 23s
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 93% | ETA: 23s
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 93% | ETA: 23s
#>
[36m•
[39m Closest occurrence:
[34m72.56
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 93% | ETA: 23s
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m499
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m500
[34m
[39m
#> - Retention rate:
[34m
[34m99.8
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 93% | ETA: 23s
#>
[32m✔
[39m Found
[34m450
[39m occurrences for species
[3mFomes fomentarius
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 93% | ETA: 23s
#>
[36m•
[39m Closest occurrence:
[34m7.43
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 93% | ETA: 23s
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 94% | ETA: 21s
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.8943471835258_47.5795695042209"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 94% | ETA: 21s
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 94% | ETA: 21s
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 94% | ETA: 21s
#>
[36m•
[39m Closest occurrence:
[34m99.07
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 94% | ETA: 21s
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m5
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m5
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 94% | ETA: 21s
#>
[32m✔
[39m Found
[34m0
[39m occurrences for species
[3mAporpium canescens
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 94% | ETA: 21s
#>
[36m•
[39m Closest occurrence:
[34m107.79
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 94% | ETA: 21s
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 95% | ETA: 18s
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.03842988440752_48.3786720927342"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 95% | ETA: 18s
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.77076006620141_47.8063748325952"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 95% | ETA: 18s
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 95% | ETA: 18s
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 95% | ETA: 18s
#>
[36m•
[39m Closest occurrence:
[34m79.19
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 95% | ETA: 18s
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.16923693295953_47.9794793927246"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 95% | ETA: 18s
#> Cleaning suppress 19 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 95% | ETA: 18s
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 95% | ETA: 18s
#>
[36m•
[39m Closest occurrence:
[34m51.04
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 95% | ETA: 18s
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 97% | ETA: 10s
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.01634392585031_48.0479919144244"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 97% | ETA: 10s
#> Cleaning suppress 16 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 97% | ETA: 10s
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 97% | ETA: 10s
#>
[36m•
[39m Closest occurrence:
[34m46.98
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 97% | ETA: 10s
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 97% | ETA: 10s
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mSistotrema oblongisporum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 97% | ETA: 10s
#>
[36m•
[39m Closest occurrence:
[34m63.52
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 97% | ETA: 10s
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.73897659801294_48.01217977865"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 97% | ETA: 10s
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m4
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m4
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 97% | ETA: 10s
#>
[32m✔
[39m Found
[34m4
[39m occurrences for species
[3mBasidiodendron eyrei
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 97% | ETA: 10s
#>
[36m•
[39m Closest occurrence:
[34m81.87
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 97% | ETA: 10s
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 97% | ETA: 10s
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mSistotrema oblongisporum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 97% | ETA: 10s
#>
[36m•
[39m Closest occurrence:
[34m82.3
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 97% | ETA: 10s
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 99% | ETA: 5s
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.81101758801005_47.5644847943449"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 99% | ETA: 5s
#> Cleaning suppress 15 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 99% | ETA: 5s
#>
[32m✔
[39m Found
[34m0
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 99% | ETA: 5s
#>
[36m•
[39m Closest occurrence:
[34m102.62
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 99% | ETA: 5s
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"2.09086831886303_47.9764279713501"
[34m
[39m
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 99% | ETA: 5s
#> Cleaning suppress 18 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m3
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m3
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 99% | ETA: 5s
#>
[32m✔
[39m Found
[34m3
[39m occurrences for species
[3mBasidiodendron eyrei
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 99% | ETA: 5s
#>
[36m•
[39m Closest occurrence:
[34m62.89
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 99% | ETA: 5s
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 99% | ETA: 5s
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mSistotrema oblongisporum
[23m:
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 99% | ETA: 5s
#>
[36m•
[39m Closest occurrence:
[34m65.33
[39m km
#>
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 99% | ETA: 5s
#>
[32m■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■
[39m 100% | ETA: 0s
#>
#>
[36mℹ
[39m Processing GPS point:
[34m
[34m"1.82895949983833_48.0224589574812"
[34m
[39m
#>
#> Cleaning suppress 17 taxa and 0 samples.
#>
#>
[1m
[22mReading
[34mne_50m_land.zip
[39m from naturalearth...
#>
[36mℹ
[39m After cleaning with CoordinateCleaner::clean_coordinates:
#> -
[34m
[34m1
[34m
[39m occurrences remain(s)
#> - Total original:
[34m
[34m1
[34m
[39m
#> - Retention rate:
[34m
[34m100
[34m
[39m%
#>
#>
[32m✔
[39m Found
[34m1
[39m occurrences for species
[3mStereum ostrea
[23m:
#>
#>
[36m•
[39m Closest occurrence:
[34m56.49
[39m km
#>
#> Cleaning suppress 10 taxa ( ASV7 / ASV12 / ASV25 / ASV27 / ASV34 / ASV41 / ASV42 / ASV46 / ASV49 / ASV54 ) and 36 sample(s) ( AD26-005-B_S9_MERGED.fastq.gz / AD26-005-H_S10_MERGED.fastq.gz / AD26-005-M_S11_MERGED.fastq.gz / ADABM30X-M_S16_MERGED.fastq.gz / B18-006-B_S19_MERGED.fastq.gz / BG7-010-H_S31_MERGED.fastq.gz / BJ8-ABM-003_S35_MERGED.fastq.gz / BQ4-018-M_S51_MERGED.fastq.gz / BR8-005_S53_MERGED.fastq.gz / BT7-006_S56_MERGED.fastq.gz / CB8-019-B_S69_MERGED.fastq.gz / CB8-019-H_S70_MERGED.fastq.gz / CB8-019-M_S71_MERGED.fastq.gz / D18-003-M_S80_MERGED.fastq.gz / D9-027-M_S85_MERGED.fastq.gz / DJ2-008-H_S88_MERGED.fastq.gz / DS1-ABM002-B_S91_MERGED.fastq.gz / DS1-ABM002-H_S92_MERGED.fastq.gz / DS1-ABM002-M_S93_MERGED.fastq.gz / DY5-004-B_S96_MERGED.fastq.gz / DY5-004-H_S97_MERGED.fastq.gz / F6-ABM-001_S105_MERGED.fastq.gz / F7-015-M_S106_MERGED.fastq.gz / H24-NVABM1-H_S111_MERGED.fastq.gz / J18-004-B_S114_MERGED.fastq.gz / J18-004-M_S116_MERGED.fastq.gz / N23-002-B_S130_MERGED.fastq.gz / NVABM-0163-H_S135_MERGED.fastq.gz / NVABM0216_S136_MERGED.fastq.gz / NVABM0244-M_S137_MERGED.fastq.gz / P27-ABM001_S155_MERGED.fastq.gz / T28-ABM602-B_S162_MERGED.fastq.gz / W25-ABMX_S164_MERGED.fastq.gz / W9-025-M_S169_MERGED.fastq.gz / X29-004-B_S174_MERGED.fastq.gz / Y31-ABM484-B_S184_MERGED.fastq.gz ).
#>
#>
[36mℹ
[39m After filtering taxa with at least
[34m
[34m1
[34m
[39m GBIF occurrences within
[34m
[34m100
[34m
[39mkm:/n - Taxa:
[34m
[34m10
[34m
[39m/
[34m
[34m20
[34m
[39m remain/n - Samples:
[34m
[34m101
[34m
[39m/
[34m
[34m137
[34m
[39m remain/n - Occurrences:
[34m
[34m175
[34m
[39m/
[34m
[34m357
[34m
[39m remain
</pre></div>
``` r
sample_locations <- data.frame(
longitude = rnorm(nsamples(data_clean), mean = 2, sd = 0.2),
latitude = rnorm(nsamples(data_clean), mean = 48, sd = 0.2)
)
# Check occurrences for multiple locations
multi_location_check <- tax_occur_multi_check_pq(
data_clean,
longitudes = sample_locations$longitude,
latitude = sample_locations$latitude,
radius_km = 100,
n_occur = 500
)
# Summarize by site
site_summary <- multi_location_check[[1]] |>
group_by(sample_name) |>
summarise(
taxa_with_occurrences = sum(count_in_radius > 0),
mean_nb_occurrences = mean(count_in_radius),
.groups = "drop"
) |>
arrange(desc(taxa_with_occurrences), desc(mean_nb_occurrences))
site_summary#> # A tibble: 134 × 3
#> sample_name taxa_with_occurrences mean_nb_occurrences
#> <chr> <int> <dbl>
#> 1 NVABM0244-M_S137_MERGED.fastq.gz 8 94.6
#> 2 T28-ABM602-B_S162_MERGED.fastq.gz 8 93.8
#> 3 CB8-019-H_S70_MERGED.fastq.gz 8 92.8
#> 4 DY5-004-H_S97_MERGED.fastq.gz 8 89.6
#> 5 N23-002-B_S130_MERGED.fastq.gz 8 83.7
#> 6 AD26-005-H_S10_MERGED.fastq.gz 8 77.3
#> 7 C9-005_S65_MERGED.fastq.gz 4 191.
#> 8 O9-005-B_S152_MERGED.fastq.gz 3 256.
#> 9 BV11-002-B_S57_MERGED.fastq.gz 3 141.
#> 10 ADABM30X-H_S15_MERGED.fastq.gz 3 2.25
#> # ℹ 124 more rowsSample Site Validation
Validate your sampling sites against known distributions:
# Define your sampling coordinates
sample_coords <- data.frame(
longitude = c(2.3, 5.4, -1.6), # Example coordinates
latitude = c(48.9, 50.6, 47.2)
)
# Check if sampling sites overlap with known ranges
site_validation <- map_dfr(1:nrow(sample_coords), function(i) {
tax_occur_check_pq(data_clean,
longitude = sample_coords$longitude[i],
latitude = sample_coords$latitude[i],
radius_km = 50,
add_to_phyloseq = FALSE
)
})
# Summarize validation results
validation_summary <- site_validation |>
group_by(sample_point_lon, sample_point_lat) |>
summarise(
taxa_with_occurrences = sum(count_in_radius > 0),
mean_nb_occurrences = mean(count_in_radius),
.groups = "drop"
)
validation_summary#> # A tibble: 3 × 4
#> sample_point_lon sample_point_lat taxa_with_occurrences mean_nb_occurrences
#> <dbl> <dbl> <int> <dbl>
#> 1 -1.6 47.2 3 1.89
#> 2 2.3 48.9 3 43.1
#> 3 5.4 50.6 5 184.Integration with Phyloseq
Add occurrence information directly to your phyloseq object:
# Add occurrence data to phyloseq tax_table
data_with_occurrence <- tax_occur_check_pq(data_clean,
longitude = longitude,
latitude = latitude,
radius_km = 100
)
# View enhanced tax_table with occurrence columns
head(data_with_occurrence@tax_table)#> Taxonomy Table: [6 taxa by 30 taxonomic ranks]:
#> Domain Phylum Class Order
#> ASV7 "Fungi" "Basidiomycota" "Agaricomycetes" "Russulales"
#> ASV8 "Fungi" "Basidiomycota" "Agaricomycetes" "Russulales"
#> ASV12 "Fungi" "Basidiomycota" "Agaricomycetes" "Hymenochaetales"
#> ASV18 "Fungi" "Basidiomycota" "Agaricomycetes" "Russulales"
#> ASV25 "Fungi" "Basidiomycota" "Agaricomycetes" "Agaricales"
#> ASV26 "Fungi" "Basidiomycota" "Agaricomycetes" "Russulales"
#> Family Genus Species Trophic.Mode
#> ASV7 "Stereaceae" NA NA "Saprotroph"
#> ASV8 "Stereaceae" "Stereum" "ostrea" "Saprotroph"
#> ASV12 "Schizoporaceae" "Xylodon" "raduloides" "Saprotroph"
#> ASV18 "Stereaceae" "Stereum" "ostrea" "Saprotroph"
#> ASV25 "Lyophyllaceae" "Ossicaulis" "lachnopus" "Saprotroph"
#> ASV26 "Stereaceae" "Stereum" "hirsutum" "Saprotroph"
#> Guild Trait Confidence.Ranking
#> ASV7 "Wood Saprotroph-Undefined Saprotroph" "NULL" "Probable"
#> ASV8 "Undefined Saprotroph" "White Rot" "Probable"
#> ASV12 "Undefined Saprotroph" "White Rot" "Probable"
#> ASV18 "Undefined Saprotroph" "White Rot" "Probable"
#> ASV25 "Wood Saprotroph" "Brown Rot" "Probable"
#> ASV26 "Undefined Saprotroph" "White Rot" "Probable"
#> Genus_species taxa_name
#> ASV7 "NA_NA" "NA"
#> ASV8 "Stereum_ostrea" "Stereum ostrea"
#> ASV12 "Xylodon_raduloides" "Xylodon"
#> ASV18 "Stereum_ostrea" "Stereum ostrea"
#> ASV25 "Ossicaulis_lachnopus" "Ossicaulis lachnopus"
#> ASV26 "Stereum_hirsutum" "Stereum hirsutum"
#> currentName currentCanonicalSimple
#> ASV7 NA NA
#> ASV8 "Stereum ostrea (Blume & T.Nees) Fr., 1838" "Stereum ostrea"
#> ASV12 "Xylodon (Pers.) Gray, 1821" "Xylodon"
#> ASV18 "Stereum ostrea (Blume & T.Nees) Fr., 1838" "Stereum ostrea"
#> ASV25 "Ossicaulis lachnopus (Fr.) Contu, 2000" "Ossicaulis lachnopus"
#> ASV26 "Stereum hirsutum (Willd.) Pers., 1800" "Stereum hirsutum"
#> genusEpithet specificEpithet namePublishedInYear authorship
#> ASV7 NA NA NA NA
#> ASV8 "Stereum" "ostrea" "1838" "Fr."
#> ASV12 "Xylodon" NA "1821" "Gray"
#> ASV18 "Stereum" "ostrea" "1838" "Fr."
#> ASV25 "Ossicaulis" "lachnopus" "2000" "Contu"
#> ASV26 "Stereum" "hirsutum" "1800" "Pers."
#> bracketauthorship scientificNameAuthorship count_in_radius
#> ASV7 NA NA NA
#> ASV8 "Blume & T.Nees" "(Blume & T.Nees) Fr." " 1"
#> ASV12 "Pers." "(Pers.) Gray" NA
#> ASV18 "Blume & T.Nees" "(Blume & T.Nees) Fr." " 1"
#> ASV25 "Fr." "(Fr.) Contu" " 0"
#> ASV26 "Willd." "(Willd.) Pers." "438"
#> closest_distance_km mean_distance_km total_count_in_world search_radius
#> ASV7 NA NA NA NA
#> ASV8 "47.07" "47.07" " 7331" "100"
#> ASV12 NA NA NA NA
#> ASV18 "47.07" "47.07" " 7331" "100"
#> ASV25 NA NA " 0" "100"
#> ASV26 " 8.30" "57.27" "114395" "100"
#> closest_point_lat closest_point_lon sample_point_lat sample_point_lon
#> ASV7 NA NA NA NA
#> ASV8 "48.43261" "2.278890" "48.8534" "2.3488"
#> ASV12 NA NA NA NA
#> ASV18 "48.43261" "2.278890" "48.8534" "2.3488"
#> ASV25 NA NA "48.8534" "2.3488"
#> ASV26 "48.79612" "2.421410" "48.8534" "2.3488"Interpreting Results
Occurrence Patterns
- High local, high global: Cosmopolitan species, expected presence
- High local, low global: Regionally endemic species
- Low local, high global: Cosmopolitan but locally rare
- Low local, low global: Rare species or potential errors
Quality Control Applications
Use occurrence checking for:
- Contamination detection: Taxa with zero local occurrences may be contaminants
- Sample validation: Ensure detected communities match biogeographic expectations
- Filtering decisions: Remove unlikely taxa from downstream analyses
- Hypothesis generation: Identify interesting biogeographic patterns
Best Practices
- Use appropriate radii for your study system and organism dispersal capability
- Consider temporal factors - GBIF data spans many years
- Account for sampling bias in GBIF data (some regions/taxa better sampled)
- Validate results with ecological knowledge of your study system
- Document thresholds used for filtering decisions
Integration with Other Functions
Occurrence checking works well with other taxinfo functions:
data_complete <- data_fungi_mini |>
# 1. Clean names
gna_verifier_pq(data_sources = 210) |>
# 2. Check occurrences
tax_occur_check_pq(
longitude = 2.3, latitude = 48.8,
radius_km = 100
) |>
subset_taxa(as.numeric(count_in_radius) > 0) |> # Keep only taxa known in a radius of 100km
# 3. Add GBIF occurrence data
tax_gbif_occur_pq() |>
# 4. Filter based on frequency in samples (Keep taxa in >2 samples)
filter_taxa(function(x) sum(x > 0) > 2, prune = TRUE) |>
# 5. Remove empty samples and taxa
clean_pq()
data_complete@tax_table[1:5, ]#> Taxonomy Table: [5 taxa by 31 taxonomic ranks]:
#> Domain Phylum Class Order
#> ASV8 "Fungi" "Basidiomycota" "Agaricomycetes" "Russulales"
#> ASV18 "Fungi" "Basidiomycota" "Agaricomycetes" "Russulales"
#> ASV26 "Fungi" "Basidiomycota" "Agaricomycetes" "Russulales"
#> ASV29 "Fungi" "Basidiomycota" "Agaricomycetes" "Auriculariales"
#> ASV32 "Fungi" "Basidiomycota" "Agaricomycetes" "Cantharellales"
#> Family Genus Species
#> ASV8 "Stereaceae" "Stereum" "ostrea"
#> ASV18 "Stereaceae" "Stereum" "ostrea"
#> ASV26 "Stereaceae" "Stereum" "hirsutum"
#> ASV29 "Exidiaceae" "Basidiodendron" "eyrei"
#> ASV32 "Cantharellales_fam_Incertae_sedis" "Sistotrema" "oblongisporum"
#> Trophic.Mode Guild Trait
#> ASV8 "Saprotroph" "Undefined Saprotroph" "White Rot"
#> ASV18 "Saprotroph" "Undefined Saprotroph" "White Rot"
#> ASV26 "Saprotroph" "Undefined Saprotroph" "White Rot"
#> ASV29 "Saprotroph" "Undefined Saprotroph" "NULL"
#> ASV32 "Saprotroph-Symbiotroph" "Ectomycorrhizal-Wood Saprotroph" "White Rot"
#> Confidence.Ranking Genus_species taxa_name
#> ASV8 "Probable" "Stereum_ostrea" "Stereum ostrea"
#> ASV18 "Probable" "Stereum_ostrea" "Stereum ostrea"
#> ASV26 "Probable" "Stereum_hirsutum" "Stereum hirsutum"
#> ASV29 "Probable" "Basidiodendron_eyrei" "Basidiodendron eyrei"
#> ASV32 "Possible" "Sistotrema_oblongisporum" "Sistotrema oblongisporum"
#> currentName
#> ASV8 "Stereum ostrea (Blume & T.Nees) Fr., 1838"
#> ASV18 "Stereum ostrea (Blume & T.Nees) Fr., 1838"
#> ASV26 "Stereum hirsutum (Willd.) Pers., 1800"
#> ASV29 "Basidiodendron eyrei (Wakef.) Luck-Allen, 1963"
#> ASV32 "Sistotrema oblongisporum M.P.Christ. & Hauerslev, 1960"
#> currentCanonicalSimple genusEpithet specificEpithet
#> ASV8 "Stereum ostrea" "Stereum" "ostrea"
#> ASV18 "Stereum ostrea" "Stereum" "ostrea"
#> ASV26 "Stereum hirsutum" "Stereum" "hirsutum"
#> ASV29 "Basidiodendron eyrei" "Basidiodendron" "eyrei"
#> ASV32 "Sistotrema oblongisporum" "Sistotrema" "oblongisporum"
#> namePublishedInYear authorship bracketauthorship
#> ASV8 "1838" "Fr." "Blume & T.Nees"
#> ASV18 "1838" "Fr." "Blume & T.Nees"
#> ASV26 "1800" "Pers." "Willd."
#> ASV29 "1963" "Luck-Allen" "Wakef."
#> ASV32 "1960" "M.P.Christ. & Hauerslev" NA
#> scientificNameAuthorship count_in_radius closest_distance_km
#> ASV8 "(Blume & T.Nees) Fr." " 1" "40.88"
#> ASV18 "(Blume & T.Nees) Fr." " 1" "40.88"
#> ASV26 "(Willd.) Pers." "442" " 5.83"
#> ASV29 "(Wakef.) Luck-Allen" " 3" "51.95"
#> ASV32 "M.P.Christ. & Hauerslev" " 1" "49.56"
#> mean_distance_km total_count_in_world search_radius closest_point_lat
#> ASV8 "40.88" " 7331" "100" "48.43261"
#> ASV18 "40.88" " 7331" "100" "48.43261"
#> ASV26 "56.10" "114395" "100" "48.76022"
#> ASV29 "55.49" " 853" "100" "48.40650"
#> ASV32 "49.56" " 2807" "100" "48.42400"
#> closest_point_lon sample_point_lat sample_point_lon Global_occurences
#> ASV8 "2.278890" "48.8" "2.3" " 10908"
#> ASV18 "2.278890" "48.8" "2.3" " 10908"
#> ASV26 "2.248180" "48.8" "2.3" "121604"
#> ASV29 "2.680920" "48.8" "2.3" " 1156"
#> ASV32 "2.662000" "48.8" "2.3" " 3032"This approach provides a robust framework for validating taxa presence and improving the reliability of your microbiome or environmental DNA analyses.
Session information
#> R version 4.5.2 (2025-10-31)
#> Platform: x86_64-pc-linux-gnu
#> Running under: Pop!_OS 24.04 LTS
#>
#> Matrix products: default
#> BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.12.0
#> LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0 LAPACK version 3.12.0
#>
#> locale:
#> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
#> [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
#> [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
#> [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
#> [9] LC_ADDRESS=C LC_TELEPHONE=C
#> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
#>
#> time zone: Europe/Paris
#> tzcode source: system (glibc)
#>
#> attached base packages:
#> [1] stats graphics grDevices utils datasets methods base
#>
#> other attached packages:
#> [1] taxinfo_0.1.2 MiscMetabar_0.15.1 divent_0.5-3 purrr_1.2.1
#> [5] dplyr_1.2.0 dada2_1.38.0 Rcpp_1.1.1 ggplot2_4.0.2
#> [9] phyloseq_1.54.2
#>
#> loaded via a namespace (and not attached):
#> [1] RColorBrewer_1.1-3 wk_0.9.5
#> [3] jsonlite_2.0.0 magrittr_2.0.4
#> [5] farver_2.1.2 CoordinateCleaner_3.0.1
#> [7] rmarkdown_2.30 fs_1.6.7
#> [9] ragg_1.5.2 vctrs_0.7.2
#> [11] multtest_2.66.0 Rsamtools_2.26.0
#> [13] RCurl_1.98-1.17 terra_1.9-1
#> [15] forcats_1.0.1 htmltools_0.5.9
#> [17] S4Arrays_1.10.1 curl_7.0.0
#> [19] s2_1.1.9 Rhdf5lib_1.32.0
#> [21] SparseArray_1.10.9 rhdf5_2.54.1
#> [23] sass_0.4.10 KernSmooth_2.23-26
#> [25] bslib_0.10.0 htmlwidgets_1.6.4
#> [27] desc_1.4.3 plyr_1.8.9
#> [29] zoo_1.8-15 cachem_1.1.0
#> [31] GenomicAlignments_1.46.0 whisker_0.4.1
#> [33] igraph_2.2.2 lifecycle_1.0.5
#> [35] iterators_1.0.14 pkgconfig_2.0.3
#> [37] Matrix_1.7-4 R6_2.6.1
#> [39] fastmap_1.2.0 rbibutils_2.4.1
#> [41] MatrixGenerics_1.22.0 digest_0.6.39
#> [43] ShortRead_1.68.0 S4Vectors_0.48.0
#> [45] textshaping_1.0.5 GenomicRanges_1.62.1
#> [47] hwriter_1.3.2.1 vegan_2.7-3
#> [49] labeling_0.4.3 urltools_1.7.3.1
#> [51] httr_1.4.8 abind_1.4-8
#> [53] mgcv_1.9-4 compiler_4.5.2
#> [55] proxy_0.4-29 withr_3.0.2
#> [57] S7_0.2.1 BiocParallel_1.44.0
#> [59] DBI_1.3.0 MASS_7.3-65
#> [61] DelayedArray_0.36.0 classInt_0.4-11
#> [63] biomformat_1.38.3 permute_0.9-10
#> [65] units_1.0-1 oai_0.4.0
#> [67] tools_4.5.2 otel_0.2.0
#> [69] ape_5.8-1 rgbif_3.8.4
#> [71] glue_1.8.0 nlme_3.1-168
#> [73] rhdf5filters_1.22.0 grid_4.5.2
#> [75] sf_1.1-0 cluster_2.1.8.2
#> [77] reshape2_1.4.5 ade4_1.7-23
#> [79] generics_0.1.4 gtable_0.3.6
#> [81] class_7.3-23 tidyr_1.3.2
#> [83] data.table_1.18.2.1 utf8_1.2.6
#> [85] xml2_1.5.2 XVector_0.50.0
#> [87] BiocGenerics_0.56.0 foreach_1.5.2
#> [89] pillar_1.11.1 stringr_1.6.0
#> [91] rglobi_0.3.4 splines_4.5.2
#> [93] lattice_0.22-9 survival_3.8-6
#> [95] deldir_2.0-4 tidyselect_1.2.1
#> [97] pbapply_1.7-4 Biostrings_2.78.0
#> [99] knitr_1.51 IRanges_2.44.0
#> [101] Seqinfo_1.0.0 SummarizedExperiment_1.40.0
#> [103] crul_1.6.0 stats4_4.5.2
#> [105] xfun_0.56 taxize_0.10.1
#> [107] Biobase_2.70.0 matrixStats_1.5.0
#> [109] stringi_1.8.7 lazyeval_0.2.2
#> [111] yaml_2.3.12 evaluate_1.0.5
#> [113] codetools_0.2-20 cigarillo_1.0.0
#> [115] httpcode_0.3.0 interp_1.1-6
#> [117] tibble_3.3.1 cli_3.6.5
#> [119] RcppParallel_5.1.11-2 systemfonts_1.3.2
#> [121] Rdpack_2.6.6 jquerylib_0.1.4
#> [123] rnaturalearth_1.2.0 triebeard_0.4.1
#> [125] png_0.1-9 parallel_4.5.2
#> [127] pkgdown_2.2.0 latticeExtra_0.6-31
#> [129] jpeg_0.1-11 bitops_1.0-9
#> [131] pwalign_1.6.0 scales_1.4.0
#> [133] e1071_1.7-17 crayon_1.5.3
#> [135] geosphere_1.6-8 rlang_1.1.7