Add information from blast_pq()
to the tax_table
slot of a phyloseq object
Source: R/blast.R
add_blast_info.Rd
Basically a wrapper of blast_pq()
with option unique_per_seq = TRUE
and
score_filter = FALSE
.
Add the information to the taxtable
Arguments
- physeq
(required): a
phyloseq-class
object obtained using thephyloseq
package.- fasta_for_db
path to a fasta file to make the blast database
- silent
(logical) If true, no message are printing.
- ...
Other arguments passed on to
blast_pq()
function.
Value
A new phyloseq-class
object with more information in tax_table based on a
blast on a given database