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lifecycle-experimental

Basically a wrapper of blast_pq() with option unique_per_seq = TRUE and score_filter = FALSE.

Add the information to the taxtable

Usage

add_blast_info(physeq, fasta_for_db, silent = FALSE, ...)

Arguments

physeq

(required): a phyloseq-class object obtained using the phyloseq package.

fasta_for_db

path to a fasta file to make the blast database

silent

(logical) If true, no message are printing.

...

Other arguments passed on to blast_pq() function.

Value

A new phyloseq-class object with more information in tax_table based on a blast on a given database

Author

Adrien Taudière