Add information from blast_pq() to the tax_table slot of a phyloseq object
Source: R/blast.R
add_blast_info.RdBasically a wrapper of blast_pq() with option unique_per_seq = TRUE and
score_filter = FALSE.
Add the information to the taxtable
Arguments
- physeq
(required) a
phyloseq-classobject obtained using thephyloseqpackage.- fasta_for_db
path to a fasta file to make the blast database
- silent
(logical) If true, no message are printing.
- suffix
(character) The suffix to name the new columns. Set the suffix to "" in order to remove any suffix.
- ...
Additional arguments passed on to
blast_pq()function.
Value
A new phyloseq-class object with more information in tax_table based on a
blast on a given database