Add dna in refseq slot of a physeq object using taxa names and renames taxa using prefix_taxa_names and number (default Taxa_1, Taxa_2 ...)

Useful in targets bioinformatic pipeline.

Usage

add_dna_to_phyloseq(physeq, prefix_taxa_names = "Taxa_")

Arguments

physeq

(required): a phyloseq-class object obtained using the phyloseq package.

prefix_taxa_names

(default "Taxa_"): the prefix of taxa names (eg. "ASV_" or "OTU_")

Value

A new phyloseq-class object with refseq slot and new taxa names

Author

Adrien Taudière