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It is a subset of the data_fungi dataset including only taxa with information at the species level

Usage

data(data_fungi_sp_known)

Format

A physeq object containing 651 taxa with references sequences described by 14 taxonomic ranks and 185 samples described by 7 sample variables:

  • X: the name of the fastq-file

  • Sample_names: the names of ... the samples

  • Treename: the name of an tree

  • Sample_id: identifier for each sample

  • Height: height of the sample in the tree

  • Diameter: diameter of the trunk

  • Time: time since the dead of the tree

Details

Obtain using data_fungi_sp_known <- subset_taxa(data_fungi, !is.na(data_fungi@tax_table[,"Species"]))