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Find the MMseqs2 binary

Source: R/mmseqs2.R
find_mmseqs2.Rd

Looks for the MMseqs2 binary in three places, in order:

  1. The option MiscMetabar.mmseqs2path (if set).

  2. A local copy installed by install_mmseqs2() in the user data directory.

  3. The system PATH.

Usage

find_mmseqs2()

Value

A character string with the path to the mmseqs binary.

See also

install_mmseqs2(), is_mmseqs2_installed(), assign_mmseqs2()

Author

Adrien Taudière