Format a fasta database in dada2 format

First format in sintax format and then in dada2 format

Usage

format2dada2(
  fasta_db = NULL,
  taxnames = NULL,
  output_path = NULL,
  from_sintax = TRUE,
  ...
)

Arguments

fasta_db

A link to a fasta files

taxnames

A list of names to format. You must specify either fasta_db OR taxnames, not both.

output_path

(optional) A path to an output fasta files. Only used if fasta_db is set.

from_sintax

(logical, default FALSE) Is the original fasta file in sintax format?

...

Additional arguments passed on to format2sintax() function

Value

Either an object of class DNAStringSet or a vector of reformated names

See also

format2dada2_species(), format2sintax()

Author

Adrien Taudière