Test if cutadapt is installed.

Useful for testthat and examples compilation for R CMD CHECK and test coverage

Usage

is_cutadapt_installed(
  args_before_cutadapt =
    "source ~/miniconda3/etc/profile.d/conda.sh && conda activate cutadaptenv && "
)

Arguments

args_before_cutadapt

: (String) A one line bash command to run before to run cutadapt. For examples, "source ~/miniconda3/etc/profile.d/conda.sh && conda activate cutadaptenv &&" allow to bypass the conda init which asks to restart the shell

Value

A logical that say if cutadapt is install in

Author

Adrien Taudière

Examples

MiscMetabar::is_cutadapt_installed()
#> Warning: running command 'bash /tmp/RtmpUQC2vn/script_cutadapt.sh 2>&1' had status 1
#> [1] TRUE