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Useful for testthat and examples compilation for R CMD CHECK and
test coverage
Usage
is_cutadapt_installed(
args_before_cutadapt =
"source ~/miniconda3/etc/profile.d/conda.sh && conda activate cutadaptenv && "
)
Arguments
- args_before_cutadapt
: (String) A one line bash command to run before
to run cutadapt. For examples, "source ~/miniconda3/etc/profile.d/conda.sh && conda activate cutadaptenv &&" allow to bypass the conda init which asks to restart the shell
Value
A logical that say if cutadapt is install in
Examples
MiscMetabar::is_cutadapt_installed()
#> Warning: running command 'bash /tmp/RtmpgNrmwH/script_cutadapt.sh 2>&1' had status 1
#> [1] TRUE