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Test if cutadapt is installed.

Source: R/miscellanous.R
is_cutadapt_installed.Rd

lifecycle-maturing

Useful for testthat and examples compilation for R CMD CHECK and test coverage

Usage

is_cutadapt_installed(
  args_before_cutadapt =
    "source ~/miniconda3/etc/profile.d/conda.sh && conda activate cutadaptenv && "
)

Arguments

args_before_cutadapt

: (String) A one line bash command to run before to run cutadapt. For examples, "source ~/miniconda3/etc/profile.d/conda.sh && conda activate cutadaptenv &&" allow to bypass the conda init which asks to restart the shell

Value

A logical that say if cutadapt is install in

Author

Adrien Taudière

Examples

MiscMetabar::is_cutadapt_installed()
#> Warning: running command 'bash /tmp/RtmpGX2r0h/script_cutadapt.sh 2>&1' had status 1
#> [1] TRUE