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Select one sample from a physeq object

Source: R/dada_phyloseq.R
select_one_sample.Rd

lifecycle-experimental

Mostly for internal used, for example in function track_wkflow_samples().

Usage

select_one_sample(physeq, sam_name, silent = FALSE)

Arguments

physeq

(required): a phyloseq-class object obtained using the phyloseq package.

sam_name

(required) The sample name to select

silent

(logical) If true, no message are printing.

Value

A new phyloseq-class object with one sample

Author

Adrien Taudière

Examples


A8_005 <- select_one_sample(data_fungi, "A8-005_S4_MERGED.fastq.gz")
#> You select 1 of 185 samples and conserved 83 out of 1420 taxa represented by 13875 sequences (out of 1839124 sequences [1%])
A8_005
#> phyloseq-class experiment-level object
#> otu_table()   OTU Table:         [ 83 taxa and 1 samples ]
#> sample_data() Sample Data:       [ 1 samples by 7 sample variables ]
#> tax_table()   Taxonomy Table:    [ 83 taxa by 12 taxonomic ranks ]
#> refseq()      DNAStringSet:      [ 83 reference sequences ]