Force taxa to be in columns in the otu_table of a physeq object

Mainly for internal use. It is a special case of clean_pq function.

Usage

taxa_as_columns(physeq)

Arguments

physeq

(required) a phyloseq-class object obtained using the phyloseq package.

Value

A new phyloseq-class object

Author

Adrien Taudière

Examples

taxa_as_columns(data_fungi_mini)
#> Taxa are now in columns.
#> phyloseq-class experiment-level object
#> otu_table()   OTU Table:         [ 45 taxa and 137 samples ]
#> sample_data() Sample Data:       [ 137 samples by 7 sample variables ]
#> tax_table()   Taxonomy Table:    [ 45 taxa by 12 taxonomic ranks ]
#> refseq()      DNAStringSet:      [ 45 reference sequences ]