Retrieve the FUNGuild database — get_funguild

The original function and documentation was written by Brendan Furneaux in the FUNGuildR package.

Please cite this publication (doi:10.1016/j.funeco.2015.06.006 ).

Usage

get_funguild_db(db_url = "http://www.stbates.org/funguild_db_2.php")

Arguments

db_url: a length 1 character string giving the URL to retrieve the database from

Value

a tibble::tibble containing the database, which can be passed to the db argument of funguild_assign()

References

Nguyen NH, Song Z, Bates ST, Branco S, Tedersoo L, Menke J, Schilling JS, Kennedy PG. 2016. FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild. Fungal Ecology 20:241-248.

Author

Brendan Furneaux (orcid: 0000-0003-3522-7363), modified by Adrien Taudière